Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g12000 ATGCGAAGAGATTTCTGTGATGGTGTGGGCATTGCTCGTCTGTTAAATGCAACCCTTGTCCTGCCAAAGTTTGAAGTAGCTTCATATTGGAATGAAACAAGTGGTTTTGCCGATGTGTATGATGTAGACTACTTCATTCAACATATGGATGGCTTTGTCAAAGTCGTCAAAGAGTTACCACCAGAGATTGCATCAAAAGAACCCGTTCGAGTGGACTGTAGCAAGCGGAAGGGCCAATTTGATTATGTTGAAAGCGTTCTTCCATCTTTGTTAAAACACAAATACATTTCAATCACACCAGCGATGTCCCAAAGAAGGGACAGGTATCCTTTGTATGCAAAAGCTGCTTTATGTCAAGCTTGTTATAAGGCATTACGACTCACCAGATCCTTGGAAATGAAAGCCTCTCAGCTTCTAGATGCAATCCCTAAACCCTTTATGTCACTTCATCTTCGTTTTGAGCCTGACATGGTTGCATACAGCCAGTGTGAGTACCCAGGCCTTTCACCTGCTTCCGTCAAAGCCATAGAAGCAGCACAAGTGGACAGAAAACCATGGACTGGAGAGTTAGCCCGCATTTGGAGACAACGCGGGAAATGTCCCCTTACACCTAATGAGACAGCTTTAATTCTTCAATCTCTTTCCATCTCACCAACCACAAATATATACCTGGCAGCTGGGGATGGTCTGATGGAAATTGAAGGTTTAACAGATACGTACACTAACATATTCACTAAGTCTAGCCTTCTCAATGGAGAAGACTTCATAAGCATGCATGGCAATACAAAAGCTGCTTTGGATTATTATGTATCTATTAATAGTGATTCATATATAGCTACATATTTTGGTAACATGGACAAGATGGTTTCAGCAATGAGAGCTTTCAAAGGGTTGTATAAAACTATATTTTTGAGCAGAAGGGGTTTTGCAGAATTAACCTCACAGGGTCTGAGGGGAAAAGAGTTTATGCAAGCACTATGGAAGCTTCACAGAGATGAGTTTGTCATGGGAAGAGGCTCAGCTCTGCCTGACTGCTTTTGCGAATTCAAGTTGTGA 1056 0.4195 MRRDFCDGVGIARLLNATLVLPKFEVASYWNETSGFADVYDVDYFIQHMDGFVKVVKELPPEIASKEPVRVDCSKRKGQFDYVESVLPSLLKHKYISITPAMSQRRDRYPLYAKAALCQACYKALRLTRSLEMKASQLLDAIPKPFMSLHLRFEPDMVAYSQCEYPGLSPASVKAIEAAQVDRKPWTGELARIWRQRGKCPLTPNETALILQSLSISPTTNIYLAAGDGLMEIEGLTDTYTNIFTKSSLLNGEDFISMHGNTKAALDYYVSINSDSYIATYFGNMDKMVSAMRAFKGLYKTIFLSRRGFAELTSQGLRGKEFMQALWKLHRDEFVMGRGSALPDCFCEFKL. 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g12000 351 Pfam GDP-fucose protein O-fucosyltransferase 1 295 IPR019378 -
Seca4g12000 351 CDD O-FucT_plant 1 301 IPR024709 -
Seca4g12000 351 PIRSF UCP009360 1 350 IPR024709 -
Seca4g12000 351 PANTHER OS02G0726500 PROTEIN-RELATED 1 334 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g12000 Seca-Chr4 260793778 260797524 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g12000 1 321 Miscellaneous Gene Families AT1G22460 34.234 3.80e-51 177
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g12000 - - lja:Lj3g3v2211450.1 675.626
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g12000 4 260793778 260797524 Seca4g12000 4 260793778 260797524 ECH