Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11977 ATGGCGTTGTTCTCTGCTGCAACTGTTCCTCCTCAGAACCTCTCCTTCTCTTCTTCCTCTAACAAACTCTCCTTCGCTCTTCCATCTTCCTCTCCTTCATCTTCTTCTTCCTCATTTCAATTTCACTTCCTTTCATTTCCAACTTCTCCATCAAACCTACGCAATAATCGCATCTTCACCTCTCCACGAACCACCCCACGCGCCCACGCGTCTCCTTCACCCTCCGCTCCCGCCACCTCCTTCCACGGACTCTGCTACGTCGTCGGCGACAACATCGACACCGACCAAATCATCCCCGCCGAATACCTCACCCTCGTCCCTTCCAAACCCGACGAGTACGAGAAGCTAGGCTCCTACGCCCTCATTGGACTCCCCGCTTCCTATGCTACCCGATTCGTCGAGCCAGGCGAGTCCAAAACCAAGTACGCCGTTGTCATCGCCGGCTCCAACTTCGGCTGCGGCTCCTCCCGGGAGCACGCGCCCGTCGCTCTCGGTGCCTCCGGCGCCGCCGCCGTGGTAGCGGAGTCCTACGCGCGGATCTTTTTCCGGAATTCGGTGGCAACCGGCGAGGTGTATCCGCTGGAGTCAGAGGCGCGGCTCTGTGATGAGTGCCGCACCGGCGATGTGGTGACGATTGAGCTTGCGGAGAGTCGTCTGATCAATCACACCACTGGAAAGGAGTATCGTTTGAAGCCGATCGGTGATGCCGGTCCGGTCATTGAGGCCGGTGGCATCTTTGCCTATGCTAGGAAAACTGGCATGATTCCCTCTCGTTGA 777 0.5766 MALFSAATVPPQNLSFSSSSNKLSFALPSSSPSSSSSSFQFHFLSFPTSPSNLRNNRIFTSPRTTPRAHASPSPSAPATSFHGLCYVVGDNIDTDQIIPAEYLTLVPSKPDEYEKLGSYALIGLPASYATRFVEPGESKTKYAVVIAGSNFGCGSSREHAPVALGASGAAAVVAESYARIFFRNSVATGEVYPLESEARLCDECRTGDVVTIELAESRLINHTTGKEYRLKPIGDAGPVIEAGGIFAYARKTGMIPSR. 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11977 258 MobiDBLite consensus disorder prediction 54 77 - -
Seca4g11977 258 Pfam Aconitase C-terminal domain 141 195 IPR000573 -
Seca4g11977 258 CDD IPMI_Swivel 87 214 IPR033940 -
Seca4g11977 258 Gene3D Aconitase, domain 4 79 254 IPR015928 -
Seca4g11977 258 FunFam Isopropylmalate/citramalate isomerase small subunit 78 254 - -
Seca4g11977 258 NCBIfam 3-isopropylmalate dehydratase, small subunit 85 251 IPR011827 GO:0016836
Seca4g11977 258 PANTHER 3-ISOPROPYLMALATE DEHYDRATASE SMALL SUBUNIT 2-RELATED-RELATED 77 256 - -
Seca4g11977 258 SUPERFAMILY LeuD/IlvD-like 80 255 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11977 Seca-Chr4 260411153 260415100 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11977 K01704 - gmx:100809737 350.903