Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11970 ATGAGCTATCCACATTATCATATGGGCTCTGGTAGTAGAACTGTTAGAAGAACTTTGGAGTTTGGGAAGACACATGTAGTGAGGCCCAAAGGAAAACACCAAGCCACTATAGTTTGGCTGCATGGCCTTGGTGATAATGGTCTGAGCTCATATCAGCACCTAGAATCCCTTCCACTTCCAAATATAAAATGGATTTGCCCAACTGCTCCTACCCGCCCTGTAAAGATACTTGGTGGTTTTCCTTGCACTGCATGGTTTGATATGGGAGAACTTTCAGAAGATGGTCCAGATGATTGGGAGGGTTTAGATGCCTCAGCTGCACATATTGCCAACTTGTTGTCAACAGAACCACCTGATGTGAAAGTTGGAATTGGAGGGTTCAGTATGGGTGCTGCAACAGCTCTATACTCTGCAACTTGTTTTGCAATGGGAAGGTATGGAAATGGCATCCCCTACCCTATCAACTTAAGAGCAGTTATTGGACTGAGTGGCTGGCTTCCAGGATCAAGGAGCTTAAGGAACAAGATTGAAGTGTCACATGAAGCAAGAAGGCGAGCTGCTTCACTGCCTGTTTTGCTAAGCCATGGAATCAGTGATGATGTAGTGCTCTACAAATACGGAGAGAAATCAGCCCAATCCTTAAGTTCAGCAGGGTTTCTATATATTACGTTCAAATCCTATGATGGGTAG 690 0.4464 MSYPHYHMGSGSRTVRRTLEFGKTHVVRPKGKHQATIVWLHGLGDNGLSSYQHLESLPLPNIKWICPTAPTRPVKILGGFPCTAWFDMGELSEDGPDDWEGLDASAAHIANLLSTEPPDVKVGIGGFSMGAATALYSATCFAMGRYGNGIPYPINLRAVIGLSGWLPGSRSLRNKIEVSHEARRRAASLPVLLSHGISDDVVLYKYGEKSAQSLSSAGFLYITFKSYDG. 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11970 229 Gene3D alpha/beta hydrolase 15 229 IPR029058 -
Seca4g11970 229 Pfam Phospholipase/Carboxylesterase 24 227 IPR003140 GO:0016787
Seca4g11970 229 PANTHER ALPHA/BETA-HYDROLASES SUPERFAMILY PROTEIN 1 229 - -
Seca4g11970 229 SUPERFAMILY alpha/beta-Hydrolases 25 228 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11970 Seca-Chr4 260378622 260381436 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11970 1 227 Acyl Lipid Metabolism Gene Families AT5G20060 67.401 2.46e-114 325
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11970 K06130 - gmx:100782153 452.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g08521 4 202941767 202946908 Seca4g11970 4 260378622 260381436 ECH
Seca6g00974 6 34861329 34865838 Seca4g11970 4 260378622 260381436 ECH
Seca4g11970 4 260378622 260381436 Seca4g11970 4 260378622 260381436 ECH
Seca4g11970 4 260378622 260381436 Seca4g08521 4 202941767 202946908 PCT