Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11967 ATGCGGTTATCTCCTCCTCCCTGTGCCTTCACTAACTGCACCGTTTCAATGTCGGGTTCTCTGATCTGGTTCCGAAAGGGTCTTCGGATCCATGATAACCCGGCTCTGGAGTTCGCTTCCCGAGGGGCTTCTCATCTTTACCCCGTCTTCGTCATCGACCCGCATTACATGAAACCCGACCCGAATGCTTTCTCCCCCGGTTCCTCTCGCGCGGGTCTCAACCGGATCAATTTCTTGCTCCAGAGCCTCGTGGACCTTGACCTCAACCTTAAGAAGCTTGGTTCCCGGCTCTTGATTCTTAAGGGTGACCCAGGCGAGGTTCTCATTCAATGCTTGAAAGAGTGGAATGTCACAAAGTTATGCTTTGAGTATGATACTGAACCATATTATCAGGCTCTAGATGTTAAAGTTAAGAACTTTGCCGTTGCTGCTGGGATTGAGGTTTACTCTCCTGTAAGTCACACACTCTTCAATCCCATGGATATTATACAGAAGAATGGAGGGAAGCCACCACTTAGTTATCAATCGTTTGTCAAGCTTGCTGGGGAACCTCCTTCCCCTCTCTCAACCAAGCATTCTTCACTTCCTCCGGTTGGCCATCTTGGAAGTTGTGATATTTCTGAAGTTCCAACACTCAAAGACCTTGGATATGAAGACACTAAACAGGATGAGTTCTCTCCTTTCAAAGGTGGTGAATCAGAAGCACTGAAGAGGTTGGCAGAATGCATGAAAGACAAGAAGTGGGTGGCAAACTTTGAGAAACCAAAGGGCAATCCAGCTGCGTTTCTTAGGCCAGCAACAACTGTTTTATCACCTTACCTGAAATTTGGTTGTCTCTCTTCCAGATATTTCTACCATTGCATTCAAGATGTATATAAAAGTTCGCCAAAACATACATCACCACCTGTTTCTCTTCTAGGACAGTTGTTATGGCGTGACTTCTTTTACACAGCAGCTTTTGGGACACCAAATTTTGATAGGATGGAAGGCAATAGGATATGCAAGCAGATTCCTTGGAAGGATGATGATAAATTGCTGGAGGCATGGAGGGACGCTAGGACAGGATTTCCTTGGATTGATGCTATCATGGTCCAGCTACGCCAATGGGGTTGGATGCATCATTTGGCACGGCATTCTGTTGCGTGTTTCCTAACTCGGGGTGATCTGTTTATTCATTGGGAAAAAGGACGTGATGTCTTTGAAAGGCTTCTGATTGATTCGGATTGGGCAATTAATAATGGAAACTGGATGTGGCTCTCATGTTCATCTTTCTTTTATCAGGTAGGAAGTATACTGCATCACTAG 1305 0.4559 MRLSPPPCAFTNCTVSMSGSLIWFRKGLRIHDNPALEFASRGASHLYPVFVIDPHYMKPDPNAFSPGSSRAGLNRINFLLQSLVDLDLNLKKLGSRLLILKGDPGEVLIQCLKEWNVTKLCFEYDTEPYYQALDVKVKNFAVAAGIEVYSPVSHTLFNPMDIIQKNGGKPPLSYQSFVKLAGEPPSPLSTKHSSLPPVGHLGSCDISEVPTLKDLGYEDTKQDEFSPFKGGESEALKRLAECMKDKKWVANFEKPKGNPAAFLRPATTVLSPYLKFGCLSSRYFYHCIQDVYKSSPKHTSPPVSLLGQLLWRDFFYTAAFGTPNFDRMEGNRICKQIPWKDDDKLLEAWRDARTGFPWIDAIMVQLRQWGWMHHLARHSVACFLTRGDLFIHWEKGRDVFERLLIDSDWAINNGNWMWLSCSSFFYQVGSILHH. 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11967 434 SUPERFAMILY Cryptochrome/photolyase, N-terminal domain 20 198 IPR036155 -
Seca4g11967 434 Gene3D DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 323 434 - -
Seca4g11967 434 ProSiteProfiles Photolyase/cryptochrome alpha/beta domain profile. 18 156 IPR006050 -
Seca4g11967 434 SUPERFAMILY Cryptochrome/photolyase FAD-binding domain 224 427 IPR036134 -
Seca4g11967 434 PANTHER CRYPTOCHROME 20 424 IPR002081 -
Seca4g11967 434 Gene3D - 154 316 - -
Seca4g11967 434 Pfam DNA photolyase 20 181 IPR006050 -
Seca4g11967 434 Gene3D HUPs 21 230 IPR014729 -
Seca4g11967 434 Pfam FAD binding domain of DNA photolyase 307 423 IPR005101 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11967 Seca-Chr4 260354251 260357226 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11967 K02295 - gmx:100780347 789.645
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g11967 4 260354251 260357226 Seca4g11967 4 260354251 260357226 ECH