Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11952 ATGGGCTCAGAAACAGAAACCACTCTAAAGCTTCCGGCTATTGACTTTACAAACCTCAAATTGGAAGCCAATAGTCCAAATTGGGAGGCAGTGAAGTCCCAAGTCCACAAGGCACTAGTTGAGTATGGTTGCTTTGAAGCAATTTTTGATAAAGTTCCTTTAGACCTTCGCAAAGCCATATTTGCTTCACTAGAAGAGCTCTTTGATCTCCCTCTACAAACCAAATTACTCAATGTGTCTAAGAAACCCTATCATGGTTATGTTGGACAATATCCCATGGTCCCACTTTATGAGAGCATGGGCATTGATGATGCAAATGTCACTGAGAAAGTTGAAAGCATGACCAACATCTTGTGGCCTGATGGAAACCCAAGTTTTAGGCACGTATATATTCATTATAATTTCAACAAAACTATACATTCATTCTCTGAGCAGCTATCAGAGTTGGATCAGATTATTAGGAAGATGATTTTGGAGAGCTTAGGTGTTGAAAAGTACTTGGATGAGCACATGAACTCAACGAATTACCTTCTCCGGGTCATGAAATACAAAGGGCCTCAAACGAGTGACACAAAGCTAGGCCTCAGCACACACACAGACAAGAACATTGTGACCATATTGTACCAAAATCAAGTGGAGGGTTTAGAAGTACTTACCAAAGATGGGAAATGGATAAACTATAAGCCTTCCCCAGACAGTTTTGTTGTTATGATTGGTGATTCTCTGCATGCATGGTCAAACGGCAGGCTGCATTCACCGTTTCACAGAGTGATGATGAGTGGGAATGAGGCAAGATACTCAGCCGGGCTATTCTCTATTCCCAAAGGAGGGTACACTATAAAAGCCCCGGAGGAACTGGTGGATGAGGAACACCCTCTTCTCTTTAAGCCTTTTGATCATGTTGAGTTTCTCAAATATTATTACACTGAAAAAGGCCAGAGAGACCAGTTTGCTCTGCGCACTTACTGTGGTGTTTGA 978 0.4192 MGSETETTLKLPAIDFTNLKLEANSPNWEAVKSQVHKALVEYGCFEAIFDKVPLDLRKAIFASLEELFDLPLQTKLLNVSKKPYHGYVGQYPMVPLYESMGIDDANVTEKVESMTNILWPDGNPSFRHVYIHYNFNKTIHSFSEQLSELDQIIRKMILESLGVEKYLDEHMNSTNYLLRVMKYKGPQTSDTKLGLSTHTDKNIVTILYQNQVEGLEVLTKDGKWINYKPSPDSFVVMIGDSLHAWSNGRLHSPFHRVMMSGNEARYSAGLFSIPKGGYTIKAPEELVDEEHPLLFKPFDHVEFLKYYYTEKGQRDQFALRTYCGV. 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11952 325 PRINTS Isopenicillin N synthase signature 234 260 - -
Seca4g11952 325 PRINTS Isopenicillin N synthase signature 198 219 - -
Seca4g11952 325 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 173 274 IPR005123 -
Seca4g11952 325 FunFam Probable 2-oxoglutarate-dependent dioxygenase AOP1.2 4 312 - -
Seca4g11952 325 Gene3D - 9 322 IPR027443 -
Seca4g11952 325 Pfam 2OG-Fe(II) oxygenase superfamily 170 271 IPR044861 -
Seca4g11952 325 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 11 305 - -
Seca4g11952 325 Pfam non-haem dioxygenase in morphine synthesis N-terminal 11 89 IPR026992 -
Seca4g11952 325 SUPERFAMILY Clavaminate synthase-like 8 312 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11952 Seca-Chr4 260186506 260187679 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11952 7 308 Glycosyltransferase AT5G59530 25.080 1.77e-19 86.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11952 - - gmx:100784444 587.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g11952 4 260186506 260187679 Seca4g11952 4 260186506 260187679 ECH