Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11926 ATGATCGTAATGCCCCGAATGCTGCATTCACTGGTGAGGCTGGCAACAGCATTAGTGTGTGAACCTACATCCACCCTCACAACCATTCTCTATTACGGCAATCTGCTTCCACGCAATCTTAACTTAGAGCGATTAGTGCGACGCGAATTTCTTGACCAAGACAACTATTTCTTCCATTTTCTCATCACTCTGTTGAGCATATCGTATGTGAAGTGTATACAGATGCGTCTAGAGATCGTGCAAAAGAGGAGGACAGCAGTGCAGAAGTTTTTGAAAAGTGACATTGCCGAGCTTCTTAGGCGTGGCCTTGACTACGATGCATATAACAGGGCTGAAGGGCTTCTGTTCGAGCAGAATATGTTATCCTGCTATGAACTCATTGCAAAATTTGTTGGATGCATATCAGATCACGTTCTAGACCTAACTAAGCAGAAGGATTGCCCTGATGAATGCAAGGAAGCTGTACCATCATTGATGTATGCTGCAGCAAGAATTGGTGATCTGCCAGAATTACGTGAACTCAGAACTTTGTTTACCGAGAAATTCGGGAATTCTCTTGAACCTTACACAAGTAAAGAGTTAGTTGAGAAGTTGAGGCGAGATCCTCCTACAGCAGAAAGGAAGATAAGATTGTTATATGATATAGCACAAGAGTTCTCTATAGAGTGGGATGGCACAGACAATGTAGTCACAGGGGGTGATGGAACAGGCTGCAATACATCCAAAGGAAAGGAAAGAGACACCATGTCTCTAGGAAGGAAGGATTTCAGCGATGACTCAGTGAGATACCAAAGCAGCAGTGACGATGATACAAGTACAGACACTTCATCCCATGATGGGCGAAAGGCTAGTTCAAGTTCATTTGGAAGCGTATCTGAGGATGAAGAAGAAATTAAGAAGCCAATTTCCTTTTGGTTTATTCAACCCCCTTACCTCAAACAAAAAACTAGCAAAGGTGAAAACATTAAAAAGAAAACAACAGATTCTGAAGCTCTACCGAAAAAGGAATCAAACCAGTATCTTCATCAACCGGTTGTTAAACAAAAGACAACATCAAGATCAACAAGGAGGAGACGTGTCAAATCAAGACCTGGTGGTGAAGATAGTGTTTCTGATGCTAAAACTTATGATGCTGCAACAATAGATTCAGGTGGAACAAAATCAGGCAAAGGAAAAGCTTATCCTTCTCCACAACCAGAATATGATATTGGGCAAAACAGAATGCATACAACACATGTCAGAGGAACATCTCTTCCTTCTAAACCCACAACTGCAGTGGAAGAAACATCAAAAGGGCATACACGAACATATTCCTTAAATCAAGAAATGCGGGGTAGTGCAGGGCATGTGCATCCTAATCTACCTGATTATGATGATTTGGTAGAGCGTCTTGCAGCTCTTAGAAGGAGATCATAG 1416 0.4195 MIVMPRMLHSLVRLATALVCEPTSTLTTILYYGNLLPRNLNLERLVRREFLDQDNYFFHFLITLLSISYVKCIQMRLEIVQKRRTAVQKFLKSDIAELLRRGLDYDAYNRAEGLLFEQNMLSCYELIAKFVGCISDHVLDLTKQKDCPDECKEAVPSLMYAAARIGDLPELRELRTLFTEKFGNSLEPYTSKELVEKLRRDPPTAERKIRLLYDIAQEFSIEWDGTDNVVTGGDGTGCNTSKGKERDTMSLGRKDFSDDSVRYQSSSDDDTSTDTSSHDGRKASSSSFGSVSEDEEEIKKPISFWFIQPPYLKQKTSKGENIKKKTTDSEALPKKESNQYLHQPVVKQKTTSRSTRRRRVKSRPGGEDSVSDAKTYDAATIDSGGTKSGKGKAYPSPQPEYDIGQNRMHTTHVRGTSLPSKPTTAVEETSKGHTRTYSLNQEMRGSAGHVHPNLPDYDDLVERLAALRRRS. 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11926 471 MobiDBLite consensus disorder prediction 230 294 - -
Seca4g11926 471 MobiDBLite consensus disorder prediction 316 397 - -
Seca4g11926 471 Pfam Regulator of Vps4 activity in the MVB pathway 70 221 IPR005061 GO:0015031
Seca4g11926 471 Gene3D - 67 231 IPR042277 -
Seca4g11926 471 MobiDBLite consensus disorder prediction 317 332 - -
Seca4g11926 471 MobiDBLite consensus disorder prediction 246 265 - -
Seca4g11926 471 PANTHER IST1 FAMILY MEMBER 70 469 IPR005061 GO:0015031
Seca4g11926 471 MobiDBLite consensus disorder prediction 413 433 - -
Seca4g11926 471 FunFam Vacuolar protein sorting-associated protein IST1 66 230 - -
Seca4g11926 471 MobiDBLite consensus disorder prediction 333 350 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11926 Seca-Chr4 259850845 259860115 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11926 - - aprc:113857213 462.996