Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11899 ATGAGGGGACGGCAGCGAGTAGCATCCAGGGAATACATGTCTGGGCATGATAAAGAAGAAAATCCAGCTTCAATGCGTTTACCAAATGCCAAACCTTGTTGGCGGCGCTCTTTGCGGCATGTAGTAGTGGCTTCTATTTCCTCATTCTTATATGGCTACCATATTGGAGTAGTTAATGAAACCTTAGAGAGCATTTCTATAGATCTCGGCTTTAGTGGGAATACAATGGCTGAAGGTCTTGTAGTAAGTATATGTTTAGGAGGTGCTTTTATTGGATCTCTGTTCAGCGGGTGGATTGCAGATGGGGTTGGGCGTAGAAGAAGTTTCCAGTTGTGTGCTTTGCCTATGATCATTGGGGCAGGGATGAGTGCAACGGCAAAGACCCTGTGGGGCATGCTTTTGGGAAGGTTATTTGTTGGTACCGGAATGGGACTTGGCCCACCTGTTGCAGCTCTTTATGTAGCTGAGGTCTCACCTCCAGCTGTACGGGGTACTTATGGGGGCTTAACTCAGATTGCAACATGTCTTGGACTCATGGGTTCTCTCTTTATTGGAATCCCAGCCAAGGAAATCGTTGGTTGGTGGCGGATTTGTTTCTGGGTATCTGTCATTCCTGCTACAATGCTTGCCCTTTTCATGGAGATCTGTGCAGAGAGTCCTCATTGGCTTTTCAAGAGAGGAAGAACCATTGAAGCTGAAGTTGAATTTGAGAAGCTCTTGGGTGCGGTACATGTGAAATCTGCAATGACTGAACTGTCAAAGTCTGAAAGAGGTGATGAGTCTGGTACAGTAAAACTCTCAGAATTATTCTACGGCTGCCATTTCAGAGTGATGTTCATTGGATCTACACTTTTTGCTTTGCAGCAGCTATCTGGCATAAATGCTGTTTTCTATTTCTCTTCAACTGTCTTTGAAAGCTTTGGTGTACCATCTGATATTGCGAACACCTGTGTTGGAATTTGTAATTTATTGGGGTCAGTTATTGCAATGATTCTGATGGATAAACTTGGAAGGAAAGTTCTTCTCCTGGGTAGCTTTTTGGGCATGGCGGCAGCAATGGGTCTACAAGTCATTGCTGCAAGTTCTTTTGCATCAGGATTTGGAGCAATGTATCTATCCGTTGGTGGCATGTTGATGTTTGTGCTATCATTTGCTCTTGGTGCCGGTCCAGTTCCTTGTCTCCTCATGTCTGAAATATTGCCTGGCAGGATCAGAGCCAAGGCAATGGCACTTTGCTTGGCTGTGCATTGGGTGATAAACTTCTTTGTGGGTCTATTGTTTTTGCGGTTGCTGGAGCAAATTGGGGCACAACTCCTATATGCTACTTTTGGTTTATTTTGTTTGTTGGCTGTTATTTTTGTGAAGAAATATGTTCTGGAAACAAAAGGGAAGTCACTTCAGGAAATTGAGATTGCACTGCTTGCACAGGAAGCAACCTAA 1440 0.4431 MRGRQRVASREYMSGHDKEENPASMRLPNAKPCWRRSLRHVVVASISSFLYGYHIGVVNETLESISIDLGFSGNTMAEGLVVSICLGGAFIGSLFSGWIADGVGRRRSFQLCALPMIIGAGMSATAKTLWGMLLGRLFVGTGMGLGPPVAALYVAEVSPPAVRGTYGGLTQIATCLGLMGSLFIGIPAKEIVGWWRICFWVSVIPATMLALFMEICAESPHWLFKRGRTIEAEVEFEKLLGAVHVKSAMTELSKSERGDESGTVKLSELFYGCHFRVMFIGSTLFALQQLSGINAVFYFSSTVFESFGVPSDIANTCVGICNLLGSVIAMILMDKLGRKVLLLGSFLGMAAAMGLQVIAASSFASGFGAMYLSVGGMLMFVLSFALGAGPVPCLLMSEILPGRIRAKAMALCLAVHWVINFFVGLLFLRLLEQIGAQLLYATFGLFCLLAVIFVKKYVLETKGKSLQEIEIALLAQEAT. 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11899 479 MobiDBLite consensus disorder prediction 1 26 - -
Seca4g11899 479 SUPERFAMILY MFS general substrate transporter 26 470 IPR036259 -
Seca4g11899 479 NCBIfam sugar porter family MFS transporter 40 469 IPR003663 GO:0016020|GO:0022857|GO:0055085
Seca4g11899 479 ProSitePatterns Sugar transport proteins signature 1. 329 345 IPR005829 GO:0016020|GO:0022857|GO:0055085
Seca4g11899 479 ProSiteProfiles Major facilitator superfamily (MFS) profile. 40 462 IPR020846 GO:0022857
Seca4g11899 479 ProSitePatterns Sugar transport proteins signature 1. 96 113 IPR005829 GO:0016020|GO:0022857|GO:0055085
Seca4g11899 479 Pfam Sugar (and other) transporter 41 471 IPR005828 GO:0016020|GO:0022857|GO:0055085
Seca4g11899 479 Gene3D MFS general substrate transporter like domains 34 474 IPR036259 -
Seca4g11899 479 PRINTS Sugar transporter signature 397 409 IPR003663 GO:0016020|GO:0022857|GO:0055085
Seca4g11899 479 PRINTS Sugar transporter signature 374 395 IPR003663 GO:0016020|GO:0022857|GO:0055085
Seca4g11899 479 PRINTS Sugar transporter signature 288 298 IPR003663 GO:0016020|GO:0022857|GO:0055085
Seca4g11899 479 PRINTS Sugar transporter signature 48 58 IPR003663 GO:0016020|GO:0022857|GO:0055085
Seca4g11899 479 PRINTS Sugar transporter signature 133 152 IPR003663 GO:0016020|GO:0022857|GO:0055085
Seca4g11899 479 PANTHER SOLUTE CARRIER FAMILY 2 33 473 IPR045263 -
Seca4g11899 479 CDD MFS_GLUT_like 43 460 - -
Seca4g11899 479 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11899 Seca-Chr4 259655610 259663689 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11899 5 418 Organic Solute Cotransporters AT1G67300 67.773 0.0 566
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11899 - - aprc:113857086 862.062