Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11895 ATGGAGAAGATGAGAATAGAGGAGGTTCAGTCGACGACGAAGAAACAGCGTGTTGCTACCCACACTCACATTAAAGGCCTAGGTCTTGAGGCCACTGGTAGAGCATTGCCTTTTGCTGCTGGGTTTGTAGGGCAATCAGAGGCAAGAGAAGCATGTGGCCTTGTGGTTGATATGATACGCCAAAAGAAGATGGCTGGTCGTGCACTCCTTCTTGCTGGACCACCGGGAACCGGCAAGACTGCATTGGCACTTGGGATAAGTCAGGAGCTTGGGACCAAGGTTCCTTTCTGCCCAATGGTTGGCTCAGAAGTATACTCATCGGAAGTAAAGAAGACTGAGGTTCTCATGGAAAATTTTCGAAGGGCTATTGGTCTACGTATTAAGGAAAATAAGGAAGTGTATGAAGGAGAGGTAACTGAGTTGTCTCCAGAAGAAACTGAGAGTGTAACAGGCGGTTATGGTAAAAGTATTAGCCATGTGATAATTGGATTGAAGACAGTGAAAGGAACCAAGCAACTGAAGTTGGATCCCACCATATATGATGCCTTGATTAAGGAAAAGGTAGCTGTTGGGGATGTTATATACATTGAGGCAAATAGTGGGGCTGTGAAAAGGGTAGGCCGAAGTGATGCTTTTGCTACAGAATTTGACCTTGAAGCAGAGGAGTATGTTCCACTTCCTAAGGGAGAGGTTCACAAAAAAAAGGAGATTGTTCAGGATGTTACCCTACATGATCTTGATGCTGCTAATGCACGGCCTCAAGGGGGACAAGATATTCTGTCTCTTATGGGTCAGATGATGAAACCCAGAAAAACAGAAATCACTGACAAGTTGAGACAAGAAATTAATAAGGTTGTCAACCGGTATATTGATGAAGGTGTAGCAGAGCTTGTTCCTGGAGTTCTATTTATTGATGAGGTGCATATGCTAGATATGGAGTGTTTTTCCTATCTGAATCGTGCTTTAGAGAGCTCCCTATCACCAATTGTAATCTTTGCTACAAATAGAGGAATATGCAATGTAAGAGGGACTGATATGTCCAGCCCTCATGGTATACCTGTTGACCTGTTGGATCGGTTGGTTATCATTCGAACACAGACCTATGGTCCTGCCGAAATGATACAGATTCTAGCTATCCGTGCTCAAGTAGAGGAACTGGTTGTGGATGAAGAAAGTCTAGCTTTCCTTGGGGAGATTGGACAACGGACATCTTTAAGGCATGCGGTTCAGCTTTTATCACCTGCCAGCATTGTTGCAAAAATGAATGGCCGAGATACCATCTGCAAGGCGGATCTTGATGAAGTTTGTTCGCTATATTTGGATGCCAAATCATCAGCCAGACTACTTCAAGAGCAGCAGGAAAAATACATCTCATAA 1377 0.4401 MEKMRIEEVQSTTKKQRVATHTHIKGLGLEATGRALPFAAGFVGQSEAREACGLVVDMIRQKKMAGRALLLAGPPGTGKTALALGISQELGTKVPFCPMVGSEVYSSEVKKTEVLMENFRRAIGLRIKENKEVYEGEVTELSPEETESVTGGYGKSISHVIIGLKTVKGTKQLKLDPTIYDALIKEKVAVGDVIYIEANSGAVKRVGRSDAFATEFDLEAEEYVPLPKGEVHKKKEIVQDVTLHDLDAANARPQGGQDILSLMGQMMKPRKTEITDKLRQEINKVVNRYIDEGVAELVPGVLFIDEVHMLDMECFSYLNRALESSLSPIVIFATNRGICNVRGTDMSSPHGIPVDLLDRLVIIRTQTYGPAEMIQILAIRAQVEELVVDEESLAFLGEIGQRTSLRHAVQLLSPASIVAKMNGRDTICKADLDEVCSLYLDAKSSARLLQEQQEKYIS. 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11895 458 Gene3D - 368 458 - -
Seca4g11895 458 Pfam TIP49 P-loop domain 17 368 IPR010339 GO:0005524
Seca4g11895 458 Pfam TIP49 AAA-lid domain 376 441 IPR041048 -
Seca4g11895 458 FunFam RuvB-like helicase 122 247 - -
Seca4g11895 458 Gene3D - 13 365 IPR027417 -
Seca4g11895 458 FunFam RuvB-like helicase 369 458 - -
Seca4g11895 458 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 41 439 IPR027417 -
Seca4g11895 458 SMART AAA_5 65 367 IPR003593 GO:0016887
Seca4g11895 458 Gene3D - 122 247 IPR042487 -
Seca4g11895 458 PANTHER RUVB-RELATED REPTIN AND PONTIN 1 458 IPR027238 GO:0008094
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11895 Seca-Chr4 259625315 259629434 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11895 K04499 - gmx:102659805 871.692