Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11800 ATGATTACAGTGAGCGTAAAATGGCAAAAGGAGCTTTTCAAAGATGTAGAAATCGATACTACCCAGCCCCCCTATGTTTTTAAGTGCCAGTTGTATGATCTGACCGGGGTACCTCCTGAAAGACAAAAAATTATGGTCAAGGGTGGTCTTTTAAAAGATGATGCTGATTGGTCAACATTAGGAGTGAAAGCGGGTCAGAAGCTAATGATGATGGGAACAGCTGATGAAATTGTGAAGTCTCCAGAGAAGGGGACTGTTTTTGTTGAAGATCTTCCTGAAGAAGAGCAAGTAGTTGCTGTTGGACATACTGCTGGTCTTTTCAATTTGGGAAATACTTGTTATATGAACTCAACATTGCAATGCCTCCATTCCGTGCCAGAGTTGAAGTCAGCTTTGCTTAACTACTCACATTCAGGACGAAACAATGATGTTGATCAGACTTCTCATATGTTGACCATTGCAACCCGTGATTTATTCAATGAGCTTGATAAAAGTGTTAAGCCTGTGGCGCCAATGCAATTTTGGATGGTATTGCGGAAAAAGTATCCTCAATTTGGCCAGCTGCACAATGGAGTGTTCATGCAACAGGATGCTGAAGAATGTTGGACACAACTTCTATACACACTTTCTCAGTCTCTCAGATCCTCTGGATCTAGTGAAAATCCTGATGCTTTGAAAGCCCTTTTTGGCATAGAACTTATTAGCAGGATTCATTGCCAAGAGAGTAATGAAGAAAGCTCAGAAACAGAATCTGTTTATTCACTTAAATGCCATATATCGCAGGAGGTGAACCATTTGCATGAAGGACTAAAACATGGATTAAAATCAGAGTTGGAAAAGGCTTCCCCTGCTTTGGGCCGTAGTGCTACCTACTTGAAGGAATCACGCATCAATGCCTTGCCTAGGTTAATATTCTCTTTTTAG 924 0.4102 MITVSVKWQKELFKDVEIDTTQPPYVFKCQLYDLTGVPPERQKIMVKGGLLKDDADWSTLGVKAGQKLMMMGTADEIVKSPEKGTVFVEDLPEEEQVVAVGHTAGLFNLGNTCYMNSTLQCLHSVPELKSALLNYSHSGRNNDVDQTSHMLTIATRDLFNELDKSVKPVAPMQFWMVLRKKYPQFGQLHNGVFMQQDAEECWTQLLYTLSQSLRSSGSSENPDALKALFGIELISRIHCQESNEESSETESVYSLKCHISQEVNHLHEGLKHGLKSELEKASPALGRSATYLKESRINALPRLIFSF. 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11800 307 ProSitePatterns Ubiquitin domain signature. 28 53 IPR019954 -
Seca4g11800 307 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 104 307 IPR028889 -
Seca4g11800 307 CDD Ubl_USP14_like 1 75 - -
Seca4g11800 307 FunFam Ubiquitin carboxyl-terminal hydrolase 14 1 73 - -
Seca4g11800 307 Gene3D Cysteine proteinases 98 306 - -
Seca4g11800 307 ProSiteProfiles Ubiquitin domain profile. 2 71 IPR000626 GO:0005515
Seca4g11800 307 Pfam Ubiquitin family 2 73 IPR000626 GO:0005515
Seca4g11800 307 SMART ubq_7 2 73 IPR000626 GO:0005515
Seca4g11800 307 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 1 303 IPR044635 GO:0004843|GO:0016579|GO:0043161
Seca4g11800 307 Pfam Ubiquitin carboxyl-terminal hydrolase 105 302 IPR001394 GO:0004843|GO:0016579
Seca4g11800 307 Gene3D - 1 73 - -
Seca4g11800 307 SUPERFAMILY Cysteine proteinases 102 303 IPR038765 -
Seca4g11800 307 SUPERFAMILY Ubiquitin-like 1 90 IPR029071 -
Seca4g11800 307 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 105 120 IPR018200 GO:0004843|GO:0006511
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11800 Seca-Chr4 258534022 258541621 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11800 K11843 - gmx:100787481 568.155
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g11800 4 258534022 258541621 Seca4g11800 4 258534022 258541621 ECH