Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11783 ATGGCTCAGCAGCCGTTTGATCCGTATTACCTGTACCAACAAGATGAACGGAGCAACATCAACACACTCTTTGTCTCTGGTCTCCCAGACGACGTGAAGGCGCGTGAGATCCACAACCTCTTCCGCCGCCGCCCCGGCTTCGACTCTTGCCAGCTCAAGTATACCGGCCGCGGCAACCAGGTCGTGGCATTTGCTACCTTTTTCAACCATCCATCAGCAATGGCAGCGTTGCACTCCCTAAATGGTGTGAAATTTGATCCTCAAACTGGATCTGTTTTACATATTGAACTTGCCAGGTCAAACTCTAGGAGGAAGCGTAAACCAGGTGGTGGAGCGTACGTGGTTATAGATAAAAGGTCAAAAGGGGACACCAATGTTCTGGGATCATCGAGTGATGATGGTAATGCTACATTGTTACGAGGTGAAAGTGACCCTGATGAACCATCGGAAAGTGGCGGCAACCATGGTGATTTAGCAACCACTCAAAGTGGTGAGACTGCTGTTGGTTCTGACAATGCTGTAGCTGTGCCGCAGGAGCAACATGAAAAGGGTGGTGATGGAGGACCGTGCTCCACTCTCTTTATCGCAAATCTCGGTCCAAACTGCACTGAGGATGAATTGAAGCAAGCTTTTTCTGGGTATACTGGATTTAACATGGTCAAAATGCGTTCTAGAGGAGGAATGCCTGTTGCATTTGCTGATTTTGAGGAAATTGATCAAGCTGCTAAGGTCATGGAGGAGCTTCAGGGCAGGTTGCTGCCATCATCTGATCGAGGCGGCATGCACATAGAATATGCAAGGTCTAAAATGAGGAAGCATTAG 822 0.4866 MAQQPFDPYYLYQQDERSNINTLFVSGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFFNHPSAMAALHSLNGVKFDPQTGSVLHIELARSNSRRKRKPGGGAYVVIDKRSKGDTNVLGSSSDDGNATLLRGESDPDEPSESGGNHGDLATTQSGETAVGSDNAVAVPQEQHEKGGDGGPCSTLFIANLGPNCTEDELKQAFSGYTGFNMVKMRSRGGMPVAFADFEEIDQAAKVMEELQGRLLPSSDRGGMHIEYARSKMRKH. 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11783 273 Gene3D - 186 273 IPR012677 -
Seca4g11783 273 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 191 268 IPR000504 GO:0003723
Seca4g11783 273 Gene3D - 16 103 IPR012677 -
Seca4g11783 273 FunFam RNA-binding protein with multiple splicing 2 18 108 - -
Seca4g11783 273 FunFam RNA-binding protein with multiple splicing 183 273 - -
Seca4g11783 273 MobiDBLite consensus disorder prediction 123 170 - -
Seca4g11783 273 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 23 86 IPR000504 GO:0003723
Seca4g11783 273 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 193 255 IPR000504 GO:0003723
Seca4g11783 273 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 21 100 IPR000504 GO:0003723
Seca4g11783 273 SMART rrm1_1 22 93 IPR000504 GO:0003723
Seca4g11783 273 SMART rrm1_1 192 264 IPR000504 GO:0003723
Seca4g11783 273 SUPERFAMILY RNA-binding domain, RBD 21 253 IPR035979 GO:0003676
Seca4g11783 273 MobiDBLite consensus disorder prediction 154 169 - -
Seca4g11783 273 CDD RRM_scw1_like 189 267 - -
Seca4g11783 273 MobiDBLite consensus disorder prediction 123 137 - -
Seca4g11783 273 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B 154 269 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11783 Seca-Chr4 258227678 258231582 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11783 - - mtr:25500436 461.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g11783 4 258227678 258231582 Seca4g11783 4 258227678 258231582 ECH