Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11774 ATGGCAAATAGTGAGACTTGTTGCTCAACTCAGCTTATTGATGGAGATGGTACATTCAATGTTTCCGGAATTGAAAACTTTATGAAGGAGGTGAAATTGAGTGAATGTGGGCTTTCGTATGCTGTGGTTTCTATAATGGGTCCACAAAGTAGTGGCAAGAGCACGCTGTTAAATAATTTGTTTCGCACTAACTTCAGAGAGATGGATGCTTTTAAGGGGAGGTCTCAAACAACTAAAGGAATCTGGATGGCTAAATGTACGGGAATAGAGCCTTGTACACTTGTGATGGATTTGGAGGGTACAGATGGAAGAGAACGTGGAGAGGATGATACTGCATTCGAAAAGCAGAGTGCTCTGTTTGCTCTTGCTGTCTCAGATATAGTGCTAATAAACATGTGGTGCCACGACATTGGCCGTGAGCAAGCTGCAAATAAACCACTTTTGAAAACTGTCTTTCAGGTCATGATGAGATTGTTTAGTCCACGCAAAACAACATTGTTGTTTGTGATACGTGATAAAACAAGGACACCACTAGAAAATTTAGAACCTGTTTTGAGAGAAGATATCCAGAAGATATGGGACTCTGTTCCTAAACCACAAGCCCACAAGGAAACCCCACTAAGTGAATTTTTCAATGTTGAAGTTGTCGCGCTTTCTAGTTATGAAGAAAAGGAAGAGCAATTTAAGGAGCAGGTTGCCAGCTTGAGGCAACGATTCCATCATTCTATCGCTCCTGGAGGGCTTGCAGGGGATCGGCGTGGAGTAGTTCCTGCTTCTGGATTTTCTTTTAGTGCTGAGCAAATATGGAAAGTCATTAAGGAGAACAGAGACCTTGACCTTCCTGCACACAAGGTTATGGTGGCTACTGTACGATGTGAAGAAATTGCCAATGAGAAATATGCCTCTTTTGTTGCAAATGAGGAATGGTGTCAATTGGAAGAGGCTGTGCAATCTGGCCCTATTCCTGGATTTGGAAAAAAGATAAATTCACTCCTTGATGCTTGTTTGTCAGAGTATGATGCCGAGGCCACTTATTTTGATGAAGGTGTGAGATCTGCAAAACAAAAGCAACTTCAAGAAAAATTGTTGCAACTTGTCCAACCAGCATTCCAATCTGTGTTGGGACATATAAGATCTGGAACTTTGGACAAATTCAAGGACACATTTGAAAAGGCTTTGAATGGAGGGGAAGGGTTTTCCGCGGCTGCTAATAATTGCACTGTGTCTTGTATGGCTCAATTTGATGAAGCATGTGCAGATGTTGTTATTGAACAAGCTAATTGGGATACATCTAAAGCACAGGAGAAACTGCGGCGTGATATTGATGCACATGTTGCATCCGTATGTGCAGCTAAGATTTCTGAACTTACTTCGTCATATGAGGCCAGACTAAAAGAAGCTTTGTCTGGATCTGTTGACGCTCTTTTGGATGGAGCTAACAGTGATACCTGGCCATCAATAAGGAGCCTTCTTAGGCGTGAGGTTGAAACAGCAGTTTCGGGGTTTTCTGCTGCACTCACTGGGTATGATATGGATGAAGAAACAAAACAAAAAATGATTTTGAGTTTAGAGGATTATGCAAGGGGTGTAGTGGAAGGAAAGGCTAGGGAAGAAGCTGGAAGGGTTCTAATCCGTATGAAAGACAGAGACACTTACCTTAAATTTGAAAACAGGTTTACAATGTTATTTAGCCATGATTCTGATTCGATGCCTCGTATTTGGTCGGGGAAAGAAGATATTCGAGCCATCACCAAAACTGCTCGCTCTGCTTCTTTGAAGTTGCTATCTGTTATGACTGCAATTCGTTTGGATGATGGTGATACTGATAATATTGAGAAAACATTAGCAGTTGCATTGTTGGATTCATCAAGCAGTGCTGTTAAGGATAGGAGCATCACAGTAGTTGATCCGTTAGCTTCTAGCAGTTGGGAACAGGTTCCATCCTCTAAAACCTTGATTACACCTGTCCAGTGCAAATCTTTGTGGAGGCAATTCAAGACAGAGACAGAGTACAGTGTCTCTCAAGCCATTTCTGCACAGGAGGCCAATAAGCGTAGTAACAACTGGTTACCTCCCCCATGGGCGATAGTTGCTTTGCTTATTCTAGGATTTAATGAATTTATGACACTTCTAAGAAATCCCTTGTATTTGGGTGTCATCTTTGTTGGTTTTCTTCTCATTAAAGCCCTGTGGGTGCAGCTTGACATTTCGGGCGAATTTCGCAATGGAGCTCTTCCGGGAATCATATCCTTGTCTAGCAAGTTTATTCCAACTATCATGAACCTTATCAGAAAACTGGCAGAGGAGGCACAGAACCCTCCTGCAACGAACAATCCTCAGAGAAACTCAACAAAAAACAATTACAATGCAGTTACTGCTGGCAGTTCTGTGTCATCTAGTGCTTCATCTAACTTGACTTCAATGGACAATGGAACCGGATATGGTAGTTCATCAAAAGATGAGTAG 2466 0.4197 MANSETCCSTQLIDGDGTFNVSGIENFMKEVKLSECGLSYAVVSIMGPQSSGKSTLLNNLFRTNFREMDAFKGRSQTTKGIWMAKCTGIEPCTLVMDLEGTDGRERGEDDTAFEKQSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAHKETPLSEFFNVEVVALSSYEEKEEQFKEQVASLRQRFHHSIAPGGLAGDRRGVVPASGFSFSAEQIWKVIKENRDLDLPAHKVMVATVRCEEIANEKYASFVANEEWCQLEEAVQSGPIPGFGKKINSLLDACLSEYDAEATYFDEGVRSAKQKQLQEKLLQLVQPAFQSVLGHIRSGTLDKFKDTFEKALNGGEGFSAAANNCTVSCMAQFDEACADVVIEQANWDTSKAQEKLRRDIDAHVASVCAAKISELTSSYEARLKEALSGSVDALLDGANSDTWPSIRSLLRREVETAVSGFSAALTGYDMDEETKQKMILSLEDYARGVVEGKAREEAGRVLIRMKDRDTYLKFENRFTMLFSHDSDSMPRIWSGKEDIRAITKTARSASLKLLSVMTAIRLDDGDTDNIEKTLAVALLDSSSSAVKDRSITVVDPLASSSWEQVPSSKTLITPVQCKSLWRQFKTETEYSVSQAISAQEANKRSNNWLPPPWAIVALLILGFNEFMTLLRNPLYLGVIFVGFLLIKALWVQLDISGEFRNGALPGIISLSSKFIPTIMNLIRKLAEEAQNPPATNNPQRNSTKNNYNAVTAGSSVSSSASSNLTSMDNGTGYGSSSKDE. 822
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11774 821 PANTHER PROTEIN SEY1 5 786 IPR008803 -
Seca4g11774 821 FunFam Protein ROOT HAIR DEFECTIVE 3 homolog 18 273 - -
Seca4g11774 821 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 11 275 IPR027417 -
Seca4g11774 821 ProSiteProfiles GB1/RHD3-type guanine nucleotide-binding (G) domain profile. 37 252 IPR030386 GO:0005525
Seca4g11774 821 Hamap Protein SEY1 [SEY1]. 9 771 IPR008803 -
Seca4g11774 821 Coils Coil 218 238 - -
Seca4g11774 821 Pfam Sey1 three-helix bundle domain 323 769 IPR046758 -
Seca4g11774 821 CDD GBP 36 239 - -
Seca4g11774 821 MobiDBLite consensus disorder prediction 771 821 - -
Seca4g11774 821 Gene3D - 15 248 IPR027417 -
Seca4g11774 821 Pfam Root hair defective 3 GTP-binding protein (RHD3) GTPase domain 46 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11774 Seca-Chr4 258105719 258114569 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11774 K22698 - gmx:100777656 1406.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g11774 4 258105719 258114569 Seca4g11774 4 258105719 258114569 PCT