Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11766 ATGGGACCCAAGGGTCGCAATGTGATAATTGAGAAAGGCCATGGGAGAATCAGGATCACGAAGGATGGTGTGACTGTGGCCAAAAGTATCAAATTTAAAGACAAAACCAAAAATGTTGGTGCTGATCTTGTCAAACAGGTGGCCAAGGCTACCAACACTGCTGCTGGAGATGGTACAACTTGTGCAACTGTTTTGACTCAGGCAATACTCACAGAAGGATGCAAATCAATTGCTGCTGGTGTAAATGTCATGGATTTGCGTAATGGAATAAATAGGGCAGTTGATGCTGTAATTACTGATCTAAAAAGCAGAGCATTAATGATAAGTACACCAGAAGAGATAACCCAGGTTGGAACTATATCTGCAAATGGGGAGCGTGATATTGGAGAATTGATAGCAAGGGCAATGGAGAAAGTTGGGAAGGAAGGAGTCATTACTGTTGCTGATGGGAATACTTTGGATAATGAGTTAGAAGTGGTAGAAGGAATGAAGTTAACTAGGGGATACATATCTCCTTATTTTATTACAGATCAGAAGACCCAGAAATGTGAATTGGAGAACCCCTTTATCCTCATCCATGACAAGAAAATTTCAGACATGAATTCGCTGTTGAAAATATTGGAGCTGGCAGTAACGAAAAAAAGACCACTCCTAGTTGTTGCGGAAGATGTTGAGAGTGATGCATTGGCTATGCTCATACTAAACAAGCATCACGGTGGGCTTAAGGTTTGTGCTATAAAAGCTCCTGGTTTTGGGGATAGTAGAAGAGCGAATCTAGATGATCTTGCAATTCTTACTGGAGGAGAGGTCATCACAGAAGATCGTGGTTTGACTCTTGACAAAGTCCAAACAGAAATGCTTGGCACAGCAAAAAAGGTAGGTCAATTGAACCAACATAATGTGCAACAGGTTTCTATCTCCATTGATGACACTATCATTCTACATGGTGGTGGGGACAAGAAGCTCATTGAAGAGAGATGTGAGCAGCTGAGGACAGCTATGGAGAAGAGTTCTGCAACGTTTGATAAAGAAAAAGCACAAGAACGGCTATCAAAACTCTCTGGTGGTGTTGCTGTTTTCAAAGTTGGGGGGGCTAGTGAAGCAGAAGTTGGGGAAAGGAAAGATAGGGTGACAGATGCTTTAAATGCCACAAGAGCAGCTGTGGAGGAGGGTATTGTTCCAGGTGGTGGAGTTGCTCTCTTATATGCTACCAAAGCCTTGAAGAACCTTCAAACTCAAAATGAGGATGAGAAAAGAGGAGTACAGATCATTCAGAATGCTCTCAAGGCACCTACGTCAACAATAGCTTCAAATGCTGGTTATGATGGTGCTTTGGTTCACAGCAAATTGTTGGAACAAGATGATCACAATTTGGGTTTTGATGCTGCTAAAGGTACCTATGTTGATATGGTGAAGGCTGGAATTATAGATCCTCTTAAAGTTGTTAGAACAGCTTTGGTAGATGCTGCCAGTGTGTCATTACTACTGACAACAACCGAGGCAGCTGTGGTGGATAATCCGAATGACAAAAATAAACCTCCCAGCCGGGTGCCAGATATGGATGATTTGGACTACTAA 1578 0.4227 MGPKGRNVIIEKGHGRIRITKDGVTVAKSIKFKDKTKNVGADLVKQVAKATNTAAGDGTTCATVLTQAILTEGCKSIAAGVNVMDLRNGINRAVDAVITDLKSRALMISTPEEITQVGTISANGERDIGELIARAMEKVGKEGVITVADGNTLDNELEVVEGMKLTRGYISPYFITDQKTQKCELENPFILIHDKKISDMNSLLKILELAVTKKRPLLVVAEDVESDALAMLILNKHHGGLKVCAIKAPGFGDSRRANLDDLAILTGGEVITEDRGLTLDKVQTEMLGTAKKVGQLNQHNVQQVSISIDDTIILHGGGDKKLIEERCEQLRTAMEKSSATFDKEKAQERLSKLSGGVAVFKVGGASEAEVGERKDRVTDALNATRAAVEEGIVPGGGVALLYATKALKNLQTQNEDEKRGVQIIQNALKAPTSTIASNAGYDGALVHSKLLEQDDHNLGFDAAKGTYVDMVKAGIIDPLKVVRTALVDAASVSLLLTTTEAAVVDNPNDKNKPPSRVPDMDDLDY. 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11766 525 ProSitePatterns Chaperonins cpn60 signature. 386 397 IPR018370 GO:0005524|GO:0006457
Seca4g11766 525 Pfam TCP-1/cpn60 chaperonin family 1 505 IPR002423 GO:0005524
Seca4g11766 525 PRINTS 60kDa chaperonin signature 53 80 IPR001844 GO:0042026|GO:0140662
Seca4g11766 525 PRINTS 60kDa chaperonin signature 331 356 IPR001844 GO:0042026|GO:0140662
Seca4g11766 525 PRINTS 60kDa chaperonin signature 238 261 IPR001844 GO:0042026|GO:0140662
Seca4g11766 525 PRINTS 60kDa chaperonin signature 379 400 IPR001844 GO:0042026|GO:0140662
Seca4g11766 525 Coils Coil 407 427 - -
Seca4g11766 525 MobiDBLite consensus disorder prediction 504 525 - -
Seca4g11766 525 SUPERFAMILY GroEL equatorial domain-like 1 503 IPR027413 -
Seca4g11766 525 Gene3D - 1 504 IPR027413 -
Seca4g11766 525 SUPERFAMILY GroEL-intermediate domain like 108 174 IPR027410 -
Seca4g11766 525 SUPERFAMILY GroEL apical domain-like 154 357 IPR027409 -
Seca4g11766 525 CDD GroEL 1 505 IPR001844 GO:0042026|GO:0140662
Seca4g11766 525 FunFam 60 kDa chaperonin 162 354 - -
Seca4g11766 525 Gene3D GroEL 162 354 IPR027409 -
Seca4g11766 525 Gene3D - 107 391 IPR027410 -
Seca4g11766 525 PANTHER 60 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL 1 514 IPR001844 GO:0042026|GO:0140662
Seca4g11766 525 NCBIfam chaperonin GroEL 1 508 IPR001844 GO:0042026|GO:0140662
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11766 Seca-Chr4 258004052 258010670 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11766 K04077 - gmx:100778935 918.302