Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11748 ATGGCATCGCATGGGTTGTGTCCTTCTATAAAAAATATTCTTCTTTTAGACTCCGAAGGGAAGCGCGTGGCAGTCAAGTATTACTCAGATGACTGGCCAACAAACAATTCAAAGTTAGCTTTTGAGAAGTTTGTATTCAGTAAGACTGTAAAGACAAATGCTCGGACTGAAGCTGAGGTGACACTACTTGAGAACAATATCATTATTTACAAATTTGTGCAAGACCTGCATTTCTTTGTCACTGGTGGTGATGATGAAAATGAGCTCATTTTGGCATCAGTTCTTCAAGGTTTCTTTGATGCAGTCACCCTTCTGTTGAGGAACAATGTTGACAAAAGAGAGGCACTTGAGAACTTGGATCTCATTCTTTTATGTCTTGACGAGATAGTTGATGGAGGGATGATACTTGAAACAAATGGACCTCTTATTGCTGAAAAAGTGACCTCCCATAGCTTGGATGCTGATGCCCCCTTGTCAGAGCAGACACTGACTCAAGCATGGGCTACAGCCAGGGAACATTTGACAAGAACCCTTTTAAAATGA 543 0.4107 MASHGLCPSIKNILLLDSEGKRVAVKYYSDDWPTNNSKLAFEKFVFSKTVKTNARTEAEVTLLENNIIIYKFVQDLHFFVTGGDDENELILASVLQGFFDAVTLLLRNNVDKREALENLDLILLCLDEIVDGGMILETNGPLIAEKVTSHSLDADAPLSEQTLTQAWATAREHLTRTLLK. 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11748 180 Gene3D - 4 150 - -
Seca4g11748 180 CDD Zeta-COP 11 146 - -
Seca4g11748 180 SUPERFAMILY SNARE-like 10 151 IPR011012 -
Seca4g11748 180 FunFam Coatomer subunit zeta-2 4 150 - -
Seca4g11748 180 Pfam Clathrin adaptor complex small chain 10 149 IPR022775 -
Seca4g11748 180 PANTHER ZETA-COAT PROTEIN 7 179 IPR039652 GO:0006890|GO:0030126
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11748 Seca-Chr4 257822465 257825754 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11748 K20472 - gmx:547466 334.339
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g11748 4 257822465 257825754 Seca4g11748 4 257822465 257825754 ECH