Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11687 ATGGTGCGAGTGAAGGCAAATGAGTCAAGAGAAAGAGGTTGGTATGATGTGAAAGTCCTTCCAGTGCATGAGTTCAAATGGTCATTTAAGGAGGGTGATGTTGCCATCCTTTCAACTCCTAGGCCTGGATCAGTCAGATCCAAGCAGAACAGTTCATCATTAGCTCAGGATGATGGGGAATCAGAAATAACTGGACGTGTGGTGGGTACAGTTAGGCGACACATACCTCTTGATACTCGTGATCCTCCTGGTGCAATTCTCCACTACTATGTCGGGGACTCTTATGATCCTAGCAGGGTTGATGATGATCATATAATAAGAAAACTTCAAGTTGGAAGCATCTGGTATCTTACAGTGCTTGGTTCTCTTGCTACTACACAGAGGGAGTATATTGCTCTACACGCATTTCGTCGCTTAAATTTGCAGATGCAAAATGCAATCCTTCAGCCTAGCCCTGAACACTTCCCAAAATATGAGCAACAGACCCCAGCCATGCCTGATTGCTTCACACAGAACTTTGTTGAGTATCTACGTAGGACCTTCAATGAACCCCAGCTGGCAGCAATCCAATGGGCAGCTATGCATACAGCTGCTGGTACAAGTAGTGGGACAACGAAGAGGCAAGAACCTTGGCCCTTTACACTTGTTCAAGGACCTCCAGGTACAGGAAAAACACATACAGTATGGGGAATGTTGAATGTCATTCACCTTGTGCAGTATCAGCATTACTACAACTCTTTGCTCAAGCATGTTTCTCCTGAAAGCTACAAGCATGCAAATGAGATCAATTCAGAGCATGCCCCCATGGGATCTATTGATGAAGTTCTTCAAAACATGGACCAAAATCTCTTACGAACTTTGCCTAAGCTGGTCCCAAAACCTAGAATGTTAGTTTGTGCTCCTTCCAATGCTGCCACTGATGAGCTTCTTGCCCGTGTTCTTGACCGTGGATTTATTGATGGAGAGATGAAAGTATATCGACCTGATGTAGCTCGAGTTGGGGTTGATTCTCAGACACGTGCTGCCCAAGCAGTTTCTGTTGAGCGGAGAACAGAACAGCTTCTATGCAAGACTAGGGAAGAAATTGTGGGATGGATGCACCAGTTAAGGAATCGTGAAGCACAGATGACTCAGCAGTTACATTGTCTTCATAGAGAACTAAATGCTGCTGCTGCTGTTGTTCGTTCCCAAGGATCTGTTGGTGTTGACCCTGACCTTCTCATGGCCCGAGATCAGAAAAAAGATACTTTGCTACAGAGCCTTGCAGCTGTGGTTGAAGGTAGGGATAAGGTTCTGGTTGAGATGTCCCGTCTTGCTGTTTTGGAAGGTAAGTTTCGACCTGGTAGCGGTTTCAATTTGGAAGAGGCCCGTGCGACTTTGGAGGCCAGTTTTGCCAATGAAGCTGAGATAGTTTTCACTACAGTTTCTAGCAGTGGCCGCAAGTTGTTTTCCCGTCTTTCCCATGGTTTTGATATGGTGGTCATCGATGAGGCAGCCCAAGCCAGTGAGGTGGCAGTTCTGCCTCCCCTCTCTCTTGGTGCAGCACGTTGTGTTCTTGTTGGAGATCCTCAGCAGCTTCCTGCTACAGTTATCAGCAAGGCTGCAGGAACATTGATGTACAGTAGGAGTCTTTTTGAAAGGTTCCAACAAGCGGGATGTCCAACAATGTTGTTGTCTGTGCAGTATAGAATGCATCCCCAAATTCGGGATTTCCCTTCTAGGTACTTTTATCAGGGGCGCCTTACTGATAGTGAAAGTGTGGTTAAATTGCCTGATGAGGCATACTACAAGGACCCTTTACTTAGACCTTATTTATTCTATGATATCAGACATGGGCGGGAGTCTCACAGAGGTGGATCAGTCTCTTATCAAAACATACATGAAGCACAATTTTGTCTCCGATTGTATGAACATGTTCAGAAAACAGTGAAATCTTTGGGTGTGGGAAAGATTACTGTTGGTATAATTACTCCTTACAAGCTGCAGTTGAAATGCCTCCAACGCGAGTTTGAGGAAGTCTTAAATTCAGAAGAAGGAAAGGATCTATATATCAATACAGTAGATGCTTTCCAAGGTCAAGAACGTGATGTCATCATAATGTCTTGTGTGCGTGCATCCAGTCATGGTGTTGGCTTTGTTGCAGACATACGTCGAATGAATGTTGCCCTCACGCGTGCAAGAAGGGCCCTTTGGGTAATGGGAAATGCAAATGCTCTGTCCCAAAATGAAGATTGGGCTGCGTTGATTGCTGATGCAAAAACTCGAAATTGCTATATGGACATGGAGTCTCTTCCAAAGGAATTTCTGGCGTCCAAGGGACCTGCTTACACACCATTGCCTGGTAAGGCTTCTTCGAATATGAGGGGCATGAGATCAGGTGGACCAAGATATAGATCAATGGACATGCATATGGAATCCAGGTTGGGAGCACCATCTGAAGATGATGAGAAGATGAGTGCTTCAATAAACTCCAGAAATGGGAGCCATCGTCCATCAAGATATTCAATGGAGAATTCCTTGGATGATTTTGATCATTTGGGTGATAAATCCAGAGATGCCTGGCAGTATGGCATACAGAAGAAGCAGAGCTCAACTGGAACCATGGGAAAGAGAGACGTGTAG 2622 0.4516 MVRVKANESRERGWYDVKVLPVHEFKWSFKEGDVAILSTPRPGSVRSKQNSSSLAQDDGESEITGRVVGTVRRHIPLDTRDPPGAILHYYVGDSYDPSRVDDDHIIRKLQVGSIWYLTVLGSLATTQREYIALHAFRRLNLQMQNAILQPSPEHFPKYEQQTPAMPDCFTQNFVEYLRRTFNEPQLAAIQWAAMHTAAGTSSGTTKRQEPWPFTLVQGPPGTGKTHTVWGMLNVIHLVQYQHYYNSLLKHVSPESYKHANEINSEHAPMGSIDEVLQNMDQNLLRTLPKLVPKPRMLVCAPSNAATDELLARVLDRGFIDGEMKVYRPDVARVGVDSQTRAAQAVSVERRTEQLLCKTREEIVGWMHQLRNREAQMTQQLHCLHRELNAAAAVVRSQGSVGVDPDLLMARDQKKDTLLQSLAAVVEGRDKVLVEMSRLAVLEGKFRPGSGFNLEEARATLEASFANEAEIVFTTVSSSGRKLFSRLSHGFDMVVIDEAAQASEVAVLPPLSLGAARCVLVGDPQQLPATVISKAAGTLMYSRSLFERFQQAGCPTMLLSVQYRMHPQIRDFPSRYFYQGRLTDSESVVKLPDEAYYKDPLLRPYLFYDIRHGRESHRGGSVSYQNIHEAQFCLRLYEHVQKTVKSLGVGKITVGIITPYKLQLKCLQREFEEVLNSEEGKDLYINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALWVMGNANALSQNEDWAALIADAKTRNCYMDMESLPKEFLASKGPAYTPLPGKASSNMRGMRSGGPRYRSMDMHMESRLGAPSEDDEKMSASINSRNGSHRPSRYSMENSLDDFDHLGDKSRDAWQYGIQKKQSSTGTMGKRDV. 874
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11687 873 MobiDBLite consensus disorder prediction 40 63 - -
Seca4g11687 873 MobiDBLite consensus disorder prediction 854 873 - -
Seca4g11687 873 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 180 765 IPR027417 -
Seca4g11687 873 CDD DEXXQc_SETX 181 563 - -
Seca4g11687 873 MobiDBLite consensus disorder prediction 42 59 - -
Seca4g11687 873 CDD SF1_C_Upf1 564 753 IPR047187 -
Seca4g11687 873 FunFam P-loop containing nucleoside triphosphate hydrolase 562 768 - -
Seca4g11687 873 Pfam AAA domain 540 736 IPR041679 -
Seca4g11687 873 Coils Coil 366 386 - -
Seca4g11687 873 MobiDBLite consensus disorder prediction 808 843 - -
Seca4g11687 873 Pfam AAA domain 187 533 IPR041677 GO:0004386
Seca4g11687 873 Gene3D - 562 768 IPR027417 -
Seca4g11687 873 PANTHER DNA2/NAM7 HELICASE FAMILY 17 819 IPR045055 -
Seca4g11687 873 Gene3D - 116 561 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11687 Seca-Chr4 256923712 256931811 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11687 - K10706 gmx:100794516 1639.78