Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11686 ATGGTTGGGTTGAGAGCCTTGTCTCTCATCGCAATCGCTTTTCATCTCGTCTTCGAAGAGTGGGTCTCAACGCCCGTTTGCAAAGTGGTTCCCAGCACCAATCAGCATGTTCAATTGGGAGAGGAAGATGACTTGAAGGTCATGATGGTCGCTAACCTCCTTCTATTGGGCTCCGAAGCTGGTTATGTCAATCACTTCTTCAGGGACTACTACATGACCAAATTCTTTCGGAAATCTTTTGAAAGTATGAAGCCTGATATGCTTCTTGTCTTGGGAGATGTTTCTGCAAAAGGTTCAGAGTTAACAAAAAGCAAATGGATGTCAGTGCTCCGTCAGTTTTACCAAGTGTTGGGGCCCTTTGTTAGTCTTCCATTCCATGCAGTTCTTGGTGATAGGGATATTGGAGAATGCAGTGATCTTGATGTGAACAAAGTCAGTTGGATTGCTCACAAATTACCGGGATTGGATTCTTCTGGTTGTGGAGCATTTGAAATTGGCAACATCAGTTTTGTCACACTAAATGCCGTGGCCTTACTTTGTAGCAACAATAGTTTGCGTTTTGGTGTTGAAAAAGTGATAGAGAGGGAAAGTCTAGAACTTCGTGAGGAAACAGAAGGCGCAACAAAAACAATAAATGATTCCACCAACTCTAGAGATGCAAACTATAACTTCTTCTGGAGGGAAAGCACTGAGTTATCTGGATCAGGCCCTGTACTTCTGCTCCACTTACCTTTGGATCAGACAAGAAATGAGCACTTTGGTGGCATTGATGCTTTCAAGAGATCTTCTACCTATTTTATAGAGGGGTTAAATGTTGTGCCAAAAAGCAGGGAGCTCATCGGTCCTGACCTGTATAAATTACTTCATACCCTCCCACTAAATGCTTCTGAATACATTTTACAAGCTCTGAAGCCAAGGATTATTTTCAGTGCACACAGGTCTACATTTTCTGAGCACGTCCATTTGGACAGAACTCATGAGATTACTGTACCAGCAATGTCATGGAACGCAAGAGATGATCCTGGATTTGTAATTGCCACTTTTCAAAAGACGGGAAGATCTATTAAGATAACATTGAAGAATTTAAAGAAAGGATCAAGATTCAGCATCTTCCATTCCTTCAACGAAGCTTTTCTCCGTTGTTCTGTTGTTGAGTTTGGCCATGCCGGCATCGTTTTCGTAGCCGAAAGATCGTGTGTGATTGATATACCAAAATCAATGGCGGAAACCGCATCACCTTCCACCATGGACCCTCAAACTCAAAACCCCTCAAATCCCAATCCGAATCCCTCTTCTTCAAACCCTACAATTTCCTCTCCTTCAATCTCCCAACAGCAATCCCCCTCACTCCACATGTCCTCTCCCTCCCTCCCTCCTCTCCCTCAAATCCCCCAAGACCAGTTGCAGCAACAGTCTCAGGGACAAGGAATGAACATGAACCCTAATGTCTCCACCTTCCAACTTCAGCAAACCCTCCAGCGAACCCCTTCCATGTCGCGCCTCAATCAAATTCAACCTCAGCAACAGCAGCAGCAGCAGCAGTTCGCCGTCTCCAGGCAACAGCAAGGACTCTACGGCGCGCAGATGAATTTCGGAGGCTCTGCCTCCGGTCAGCAGCAGCAATTAGGCAGCTCCAATCTGTCACGGTCAGCATTGATAGGGCAGAGTGGCCACTTCCCCATGTTGTCTGGTGCTGGAGCACAGTTTAACCTGTTGTCCTCGCCGAGGCAGAAAGGTGGGCTAGTCCAACCCTCTCAATTCTCTTCGGCTAATTCTCCTGGACAGTCGCTGCAAGGAATGCAAGCAATGGGGATGATGGGGTCACCAAATCTCAGCTCGCAACTAAGAGCCAATGGAGCCCTTGCTTATGCTCAGCAGCTGCGAATGAGTCAGGGACAAATCAGGCAGCAATTATCCCAGCAGAGTTCGCTTAACTCTCAACAGGTTCAGGGTTTACCAAGGTCATCATCCCTTGCTTTTATGAATTCCCAGTTGTCTGGGTTGTCTCAGAATGGACAGCCTGCAATGATTCATAATTCTTTAACACAGCAACAGTGGCTTAAGCAAATGCCAGCAATGTCTGGTCCTGCCTCACCATTGCGTCTTCAACAACATCAGAGGCAGCAACAGCTGGCTTCATCGACTCAACTGCAACAGAACTCTATGACCCTGAACCAACAGCATTTGTCCCAGTTGATGCAGCAACAGAAATCAATGGGGCAGCCTCAGCTGCATCAACAGCAACAGCAGCAGCAGCAGCTGCCTCAGCAACAGCAGCAGCAGCAGCAACAACTTATACAACAGCAGCCACAACAACAGTCTCAACTACAAGCATCTGTTCATCAACAGCAACAGCAGCAGTCTCCAAGGATACCAGGACCCACGGGCCAGAAGTCACTTAGTTTAACAGGATCGCAGCCAGATGCTACTGCATCTGGAGCAACTACACCAGGGGGAAGTTCAAGCCAAGGAACTGAAGCAACAAATCAAGTCCTTGGGAAGAGAAAAATACAAGATTTAGTTGCACAGGTGGATCCACAGGGTAAGCTGGACCCTGAAGTTATAGATCTTCTTTTAGAGCTTGCTGATGACTTCATTGATTCTCTAAGGAGGGAGATCCCTATTGGGATCAAAAAGGGAATGGGGAATGTCATGCCGGGGAATCAAACCCCCAGCCCCAAGCAGGCCCTTGACCTTAAAGATCAGGGGAGTAACATGGTAAGCATTCAGACAACTACACATGGTTGTATTTTGGCGAAACATAGAAAATCATCAACTTTGGAGTCCAAGGATTTATTGCTACACCTAGAAAAAAATTGGGATTTAACAATTCCAGGATATTCAAGTGAAGAGAAGAAGCACCAGAACAAACCTGTAAGCAACAAATCATTTCTCGCTCTTCCCCTTCTGTCCTGGTGCCCCCCTTTTCCCAAAATAAGAAAATCAATAACTTATGATTATCGGATTCTTACTTGCTATGCTTCAAACTTGCAGCAAATAAATGACCTCCACAAGAGGCGTCTAGATATGATTCGCACATTGATGGAATCCTCACACTCAGAATCAAGTATTAACAGTTCTAAAGAGATGAGTAGACAGGGCCTTCCTAACCCTGTGGGTGCCCACCATCTAATGAGACCCCTGAGTTCAGAGCAGTTGGTTTCTCATTCTACCGGTTCTCCAATGCTACAGCAGATGACAAGGTTTTAG 3210 0.4592 MVGLRALSLIAIAFHLVFEEWVSTPVCKVVPSTNQHVQLGEEDDLKVMMVANLLLLGSEAGYVNHFFRDYYMTKFFRKSFESMKPDMLLVLGDVSAKGSELTKSKWMSVLRQFYQVLGPFVSLPFHAVLGDRDIGECSDLDVNKVSWIAHKLPGLDSSGCGAFEIGNISFVTLNAVALLCSNNSLRFGVEKVIERESLELREETEGATKTINDSTNSRDANYNFFWRESTELSGSGPVLLLHLPLDQTRNEHFGGIDAFKRSSTYFIEGLNVVPKSRELIGPDLYKLLHTLPLNASEYILQALKPRIIFSAHRSTFSEHVHLDRTHEITVPAMSWNARDDPGFVIATFQKTGRSIKITLKNLKKGSRFSIFHSFNEAFLRCSVVEFGHAGIVFVAERSCVIDIPKSMAETASPSTMDPQTQNPSNPNPNPSSSNPTISSPSISQQQSPSLHMSSPSLPPLPQIPQDQLQQQSQGQGMNMNPNVSTFQLQQTLQRTPSMSRLNQIQPQQQQQQQQFAVSRQQQGLYGAQMNFGGSASGQQQQLGSSNLSRSALIGQSGHFPMLSGAGAQFNLLSSPRQKGGLVQPSQFSSANSPGQSLQGMQAMGMMGSPNLSSQLRANGALAYAQQLRMSQGQIRQQLSQQSSLNSQQVQGLPRSSSLAFMNSQLSGLSQNGQPAMIHNSLTQQQWLKQMPAMSGPASPLRLQQHQRQQQLASSTQLQQNSMTLNQQHLSQLMQQQKSMGQPQLHQQQQQQQQLPQQQQQQQQQLIQQQPQQQSQLQASVHQQQQQQSPRIPGPTGQKSLSLTGSQPDATASGATTPGGSSSQGTEATNQVLGKRKIQDLVAQVDPQGKLDPEVIDLLLELADDFIDSLRREIPIGIKKGMGNVMPGNQTPSPKQALDLKDQGSNMVSIQTTTHGCILAKHRKSSTLESKDLLLHLEKNWDLTIPGYSSEEKKHQNKPVSNKSFLALPLLSWCPPFPKIRKSITYDYRILTCYASNLQQINDLHKRRLDMIRTLMESSHSESSINSSKEMSRQGLPNPVGAHHLMRPLSSEQLVSHSTGSPMLQQMTRF. 1070
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11686 1069 CDD TAF12 832 942 IPR003228 GO:0005669|GO:0006352
Seca4g11686 1069 Gene3D Histone, subunit A 827 873 IPR009072 GO:0046982
Seca4g11686 1069 Gene3D Histone, subunit A 906 944 IPR009072 GO:0046982
Seca4g11686 1069 SUPERFAMILY Metallo-dependent phosphatases 68 365 IPR029052 -
Seca4g11686 1069 MobiDBLite consensus disorder prediction 691 716 - -
Seca4g11686 1069 Pfam Transcription initiation factor TFIID subunit A 833 870 IPR003228 GO:0005669|GO:0006352
Seca4g11686 1069 Pfam Transcription initiation factor TFIID subunit A 911 942 IPR003228 GO:0005669|GO:0006352
Seca4g11686 1069 MobiDBLite consensus disorder prediction 463 481 - -
Seca4g11686 1069 MobiDBLite consensus disorder prediction 575 596 - -
Seca4g11686 1069 MobiDBLite consensus disorder prediction 699 716 - -
Seca4g11686 1069 SUPERFAMILY Histone-fold 830 871 IPR009072 GO:0046982
Seca4g11686 1069 MobiDBLite consensus disorder prediction 1018 1033 - -
Seca4g11686 1069 MobiDBLite consensus disorder prediction 731 752 - -
Seca4g11686 1069 MobiDBLite consensus disorder prediction 1018 1043 - -
Seca4g11686 1069 MobiDBLite consensus disorder prediction 497 516 - -
Seca4g11686 1069 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 12 416 764 IPR037794 GO:0000124|GO:0005669|GO:0046695
Seca4g11686 1069 MobiDBLite consensus disorder prediction 409 481 - -
Seca4g11686 1069 MobiDBLite consensus disorder prediction 431 453 - -
Seca4g11686 1069 MobiDBLite consensus disorder prediction 774 831 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11686 Seca-Chr4 256888683 256902635 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11686 K03126 - gmx:100783017 617.076
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g11686 4 256888683 256902635 Seca4g11686 4 256888683 256902635 ECH