Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11683 ATGGCTGCTGAATCGCCAAGTTCTGTTCGTAAAGTGGTTGTTCATCTCAGAGCCACCGGTGATGCTCCTATTCTAAAGCAATCAAAATTCAAGATAGCAGGAACTGATAAATTTGCCAAAGTGATAGACTTTCTTCGCCGGCAGCTCCACAGGGACACATTGTTTGTATATGTCAATAGTGCCTTTTCACCAAATCCTGATGAACTCGTCATTGATTTGTATAATGTAAGAAATTACTGGATCCCTCCCTCTTACTCCATTGATTTTTATATCTTCATTGAATGTAAATGA 291 0.3918 MAAESPSSVRKVVVHLRATGDAPILKQSKFKIAGTDKFAKVIDFLRRQLHRDTLFVYVNSAFSPNPDELVIDLYNVRNYWIPPSYSIDFYIFIECK. 97
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11683 96 Pfam Ubiquitin-like autophagy protein Apg12 11 75 IPR007242 GO:0000045|GO:0005737
Seca4g11683 96 SUPERFAMILY Ubiquitin-like 10 78 IPR029071 -
Seca4g11683 96 CDD Ubl_ATG12 11 75 - -
Seca4g11683 96 FunFam Ubiquitin-like protein ATG12 5 81 - -
Seca4g11683 96 Gene3D - 1 78 - -
Seca4g11683 96 PANTHER AUTOPHAGY PROTEIN 12 3 76 IPR007242 GO:0000045|GO:0005737
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11683 Seca-Chr4 256830851 256834462 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11683 K08336 - tcc:18596213 145.591
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g11683 4 256830851 256834462 Seca4g11683 4 256830851 256834462 ECH