Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11679 ATGCTTCACATTGTTTTCCTCTTTTCTCTTCTCATATCCACTTGTTCCAATGCTTCTGTCCAAGACTTCTGTGTAGCAGACCTCAAGGCTCAAGATGGCCCTGCAGGCTATCCCTGCAAGACAGCTACTACTGTTACTGCAGATGACTTTGCATTTTCTGGCTTAGTTGAACCTGGAAACATCACAAACATAATCAATGCTGCTGTAACCCCTGCATTTGTTGGTCAATTTCCAGGTGTTAATGGTCTTGGTCTCTCTGCAGCAAGGTTGGACCTTGGTCCTGCTGGTGTTATCCCACTGCATACTCATCCTGGTGCCAATGAACTACTAATAGTGAAACAGGGTCACATCACTGCTGGGTTTATATCATCAGCTAACACTGTTTACATAAAGACACTGAAAAAGGGAGAGCTTATGGTTTTCCCACAAGGATTGTTGCATTTTCAAATAACTGCTGGTAAGAAAGATGCAGTTGCTTTTGTTGTTTTCAGTAGTGCAAACCCAGGGCTTCAAATCCTTGATTTTGCATTGTTTGCCAGCAACTTCTCCACTCCTTTAGTGGCACAAACTACTTTCCTTGATCCTGCCTTATGCATTTGCATTCCTTTGTGTCAATGTGGAGCAATAAATTCGAGTGTTTGGTTTTTGTTTTTCCTTTTCTCTTCCACTTCTTCCCATGCTTCTGTGGTAGACTTCTGTGTAGCAGACCTAAAGAGTACAGAAAACCCCACAGGCTATCCCTGCAAGTCCCCTGTAACAGTGGATGACTTCGTGTTCTCTAACTTCCGAGCTGGAAACACCTCAAACTTCTTCAAAGCTTCATTAACCCCTGCATTTGTTGATCAATTTCCAGGTGTTAATGGCCTTGGCTTCTCTGCAGCGAGGATGGACATAGAAGCTGGTGGTATAGTCCCAATGCACTCTCATCCTGGTGCCTCTGAGTTACTAATTATGGTGCAAGGTCGCATCACTGCTGGGTTTATATCATCAGATAATTCTGTTTTTGTAAAGACACTTGCAAAGGGAGATGTCATGGTTTTCCCACAAGGATTGATGCATTTTCAGCTGAATGCTGGTAAGGGAAGAGCCACCGCTTTCCTCACTTTCAGTAGCCCAAATCCTGGTGCACAACTCCTTGATCTTGCATTGTTTGGTAACAACTTAGATTCTGCTATTGTGGGAAAGACTACCTTCCTTGATATTGCCCAAGTCAAAAAGCTTAAGGCTGTGTTTGGGGGTCGTGGCTAG 1248 0.4375 MLHIVFLFSLLISTCSNASVQDFCVADLKAQDGPAGYPCKTATTVTADDFAFSGLVEPGNITNIINAAVTPAFVGQFPGVNGLGLSAARLDLGPAGVIPLHTHPGANELLIVKQGHITAGFISSANTVYIKTLKKGELMVFPQGLLHFQITAGKKDAVAFVVFSSANPGLQILDFALFASNFSTPLVAQTTFLDPALCICIPLCQCGAINSSVWFLFFLFSSTSSHASVVDFCVADLKSTENPTGYPCKSPVTVDDFVFSNFRAGNTSNFFKASLTPAFVDQFPGVNGLGFSAARMDIEAGGIVPMHSHPGASELLIMVQGRITAGFISSDNSVFVKTLAKGDVMVFPQGLMHFQLNAGKGRATAFLTFSSPNPGAQLLDLALFGNNLDSAIVGKTTFLDIAQVKKLKAVFGGRG. 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11679 415 Gene3D Jelly Rolls 225 414 IPR014710 -
Seca4g11679 415 Gene3D Jelly Rolls 17 198 IPR014710 -
Seca4g11679 415 CDD cupin_OxOx 16 196 IPR001929 GO:0030145
Seca4g11679 415 FunFam Auxin-binding protein ABP19a 17 199 - -
Seca4g11679 415 ProSitePatterns Germin family signature. 96 109 IPR019780 GO:0030145
Seca4g11679 415 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 14 190 - -
Seca4g11679 415 SUPERFAMILY RmlC-like cupins 229 409 IPR011051 -
Seca4g11679 415 FunFam Auxin-binding protein ABP19a 226 414 - -
Seca4g11679 415 CDD cupin_OxOx 225 411 IPR001929 GO:0030145
Seca4g11679 415 Pfam Cupin 263 404 IPR006045 -
Seca4g11679 415 Pfam Cupin 54 194 IPR006045 -
Seca4g11679 415 SUPERFAMILY RmlC-like cupins 18 194 IPR011051 -
Seca4g11679 415 ProSitePatterns Germin family signature. 302 315 IPR019780 GO:0030145
Seca4g11679 415 SMART Cupin_1_3 260 405 IPR006045 -
Seca4g11679 415 SMART Cupin_1_3 53 199 IPR006045 -
Seca4g11679 415 PRINTS Germin signature 337 357 IPR001929 GO:0030145
Seca4g11679 415 PRINTS Germin signature 370 385 IPR001929 GO:0030145
Seca4g11679 415 PRINTS Germin signature 307 327 IPR001929 GO:0030145
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11679 Seca-Chr4 256726433 256736301 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11679 226 415 Miscellaneous Gene Families AT1G72610 59.585 4.43e-76 233
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11679 - - cam:101508818 406.371