Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11677 ATGAAGATGATTTACGTTCTTTTCCTTTTCGCCCTTCTCTCATACACTAATGCTTCTGTCAATGATTTCTGTGTAGCAGACCTGAAGGGTCCAGATAGCCCTTCTGGCTATCAGTGCAAGCCAATCTCTTCCGTAACAGCAGATGACTTTGTGTTTCATGGCTTTGTAGCTGGAAACACCACTAACTCTTTCAACGCTGCATTGACCTCTGCATTTGTTACTGACTTTCCAGGTGTTAATGGGCTTGGCATCTCTGCAGCTCGCTTAGACATAGCCAAAGGTGGATCCATCCCAATGCACACACATCCTGGTGCCACTGAACTACTGATAATGGTGGAAGGTGAAATCACCGCTGGATTCATGACACCAACTGCACTCTATTCAAAGACACTTAAACCGGGAGATCTCATGGTTTTCCCACAAGGACAGTTGCATTTTCAAGTGAATTCTGGTAACGGAAAAGCCACTGCTTTTCTTGCTTTCAGTAGCGCAAACCCTGGCGCCCAACTACTTGATCTTCTATTATTTGGTAACGCCTTATCTACTGACATAGTAGCACAAACTACCTTCCTTGATGTTGCCCAAGTCAAGAAGCTTAAGGCTCGTTTTGGTGGCAGAAACTAA 624 0.4471 MKMIYVLFLFALLSYTNASVNDFCVADLKGPDSPSGYQCKPISSVTADDFVFHGFVAGNTTNSFNAALTSAFVTDFPGVNGLGISAARLDIAKGGSIPMHTHPGATELLIMVEGEITAGFMTPTALYSKTLKPGDLMVFPQGQLHFQVNSGNGKATAFLAFSSANPGAQLLDLLLFGNALSTDIVAQTTFLDVAQVKKLKARFGGRN. 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11677 207 Pfam Cupin 56 197 IPR006045 -
Seca4g11677 207 Gene3D Jelly Rolls 17 207 IPR014710 -
Seca4g11677 207 PRINTS Germin signature 162 177 IPR001929 GO:0030145
Seca4g11677 207 PRINTS Germin signature 100 120 IPR001929 GO:0030145
Seca4g11677 207 PRINTS Germin signature 129 149 IPR001929 GO:0030145
Seca4g11677 207 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 14 200 - -
Seca4g11677 207 SMART Cupin_1_3 53 197 IPR006045 -
Seca4g11677 207 ProSitePatterns Germin family signature. 95 108 IPR019780 GO:0030145
Seca4g11677 207 FunFam Auxin-binding protein ABP19a 17 206 - -
Seca4g11677 207 SUPERFAMILY RmlC-like cupins 22 204 IPR011051 -
Seca4g11677 207 CDD cupin_OxOx 20 203 IPR001929 GO:0030145
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11677 Seca-Chr4 256700575 256701198 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11677 1 207 Miscellaneous Gene Families AT5G20630 55.924 3.50e-75 224
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11677 - - gmx:100527498 374.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g11677 4 256700575 256701198 Seca4g11677 4 256700575 256701198 ECH