Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11676 ATGCATGTGATTCTTCACCTTCTTGTTTTCCTTTTCGCTCTTCTCTCATTGATCATTTGCCATGCTTCTACTACTATCACTATCACTGAATTCTGTGTTGCAAACTTGCAGCTTCCAGTTACCCCATCAGGCTATCCCTGCAAGCCACTTGCAAATGTAACAACGAATGACTTTGCGTTCTCTGGCTTTGTACCAGGAAAGCCCATAGAACCTTTCAATGTTGCAACCACTTCTGCATCTGTAACTAATTTTCCTGGTCTCAACGGACTTGGCATCTCTGCGGCACGTGTAGACATGGGTATAGGTGGAACAGTCCCAATGCACACACATGCGCGTGCCACTGAACTACTGATAATGGTACAAGGTCAAATGACTGCAGGCTTTATAACACCTAATGCAGTTTATATGAAGAATCTGAAACCAGGAGATCTTTTTGTTTTCCCACAAGGATTATTGCATTTTCAATATAATTCTGGTGCGGGGAATGCAACTGCTTTTGCTGCTTACAGTAGCCCAGACCCTGGCTTGGATCTACTTGATATTCTGTTATTTGGCAACAACTTGACTTCTCAAACAGTGTCACGAACTACCTTGATCAATGACCTTAAGTATCCAGATACCCCTTCAGGCTATCCTTGCAAGTCACCCACTAATGTAACAGTGGATGACTTTGTGTTCTCGGGCTTTCATATAGAAGGAAACACCACAAACATTTTCAAGGTTGGATTCACCACTGCATTTGTTACTGATTTTCCTGGTGTCAATGGGCTTGGCATCTCAGCAGCACGGATAGACGTTGGTGAAAATGGATCAGTCCCAATGCACACACATCCTGGTCAACTCACTGCTGGCTTTATAACACCTACTGCACTTTATGTGAAGAAGACGTTGAAACCGGGAGATATTATAATTTTCCCACAAGGACAATTGCATTTTCTAGTAAATTCTGGTGTGGGAAAAGCAACTGCTTTTTCCGCTTACAGTAGCCCAAACCCTGGTGTGCAACTACTTGATCTTCTACTATTTGACAATAGCTTACCTTCTGAAATAGTGGCCAAAACTACCTTAATTGGTGTTTCCGAAATCAAGAAGCTTAAGGCTCTTTTTGATTTTGCTCTTCTCTCATTCACTTCTTCTTCCCATGCTTCTGTTAATGATTTCTGTGTAGCTGACCTAAAGCAACCAGATACCCCTTCAGGCTATCCCTGCAAGTCACCAGCCAATGTAACAGTGGATGACTTTGTGTTCTCTGGCTTTCATGTAGCTGGAAACACCACAAACGCTTTCAAGGTTGGAATCATCCCTGCATTTGATACTACTTTTCCAGGTGTCAATGGACTTGGCATCTCTGCGGCACGGATAGACGTAGGTGAAGGTGGATCTGTCCCAATGCATACACATCCACATGCCAGTGAACTCATAATATTGGTCGAAGGTCAACTCATTGCTGGCTTTATGACACCTTCAACACTTTATTTGAAGACACTGAAAAAAGGAGATATTATGGTTTTCCCACAAGGACAATTGCATTTTCAAGTGAATTCTGGTAAGGGAAAAGCCACTATTTTTACCGCTTTCAGCAGCTCAAACCCTGGCTTCCAAGTGCTTGATTTTCTATTATTTAGCAACGACTTACCTTCTGAAATATTGGCACAAATTACCTTCATTGATCTTTCCGAAATCAAGAAGCTTCAGGCTCTTTTCCATGGCAAGAGCTTGGGTTTCTGA 1728 0.4242 MHVILHLLVFLFALLSLIICHASTTITITEFCVANLQLPVTPSGYPCKPLANVTTNDFAFSGFVPGKPIEPFNVATTSASVTNFPGLNGLGISAARVDMGIGGTVPMHTHARATELLIMVQGQMTAGFITPNAVYMKNLKPGDLFVFPQGLLHFQYNSGAGNATAFAAYSSPDPGLDLLDILLFGNNLTSQTVSRTTLINDLKYPDTPSGYPCKSPTNVTVDDFVFSGFHIEGNTTNIFKVGFTTAFVTDFPGVNGLGISAARIDVGENGSVPMHTHPGQLTAGFITPTALYVKKTLKPGDIIIFPQGQLHFLVNSGVGKATAFSAYSSPNPGVQLLDLLLFDNSLPSEIVAKTTLIGVSEIKKLKALFDFALLSFTSSSHASVNDFCVADLKQPDTPSGYPCKSPANVTVDDFVFSGFHVAGNTTNAFKVGIIPAFDTTFPGVNGLGISAARIDVGEGGSVPMHTHPHASELIILVEGQLIAGFMTPSTLYLKTLKKGDIMVFPQGQLHFQVNSGKGKATIFTAFSSSNPGFQVLDFLLFSNDLPSEILAQITFIDLSEIKKLQALFHGKSLGF. 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11676 575 SUPERFAMILY RmlC-like cupins 202 366 IPR011051 -
Seca4g11676 575 SMART Cupin_1_3 227 363 IPR006045 -
Seca4g11676 575 SMART Cupin_1_3 417 562 IPR006045 -
Seca4g11676 575 SMART Cupin_1_3 61 205 IPR006045 -
Seca4g11676 575 CDD cupin_OxOx 28 201 IPR001929 GO:0030145
Seca4g11676 575 SUPERFAMILY RmlC-like cupins 383 565 IPR011051 -
Seca4g11676 575 Pfam Cupin 241 361 IPR006045 -
Seca4g11676 575 Pfam Cupin 64 176 IPR006045 -
Seca4g11676 575 Pfam Cupin 433 560 IPR006045 -
Seca4g11676 575 Gene3D Jelly Rolls 380 572 IPR014710 -
Seca4g11676 575 Gene3D Jelly Rolls 26 201 IPR014710 -
Seca4g11676 575 Gene3D Jelly Rolls 202 372 IPR014710 -
Seca4g11676 575 ProSitePatterns Germin family signature. 460 473 IPR019780 GO:0030145
Seca4g11676 575 PRINTS Germin signature 465 485 IPR001929 GO:0030145
Seca4g11676 575 PRINTS Germin signature 494 514 IPR001929 GO:0030145
Seca4g11676 575 PRINTS Germin signature 527 542 IPR001929 GO:0030145
Seca4g11676 575 FunFam Auxin-binding protein ABP19a 381 571 - -
Seca4g11676 575 CDD cupin_OxOx 201 369 IPR001929 GO:0030145
Seca4g11676 575 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 376 565 - -
Seca4g11676 575 FunFam Auxin-binding protein ABP19a 25 203 - -
Seca4g11676 575 SUPERFAMILY RmlC-like cupins 29 186 IPR011051 -
Seca4g11676 575 CDD cupin_OxOx 380 568 IPR001929 GO:0030145
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11676 Seca-Chr4 256647006 256661671 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11676 371 570 Miscellaneous Gene Families AT5G20630 53.465 5.06e-71 225
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11676 - - cam:101508818 415.616
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g11676 4 256647006 256661671 Seca4g11676 4 256647006 256661671 ECH