Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11675 ATGAAGATGATGATTCACATTCTTCTTTTCCTCTTAGGTCTTTTCTCATATGCTTTTTCCCAAGGTATTGTGAATGATTTCTGTGTAGCAGACCTGAAGCTTCCATCTACCCCTTCAGGCTATCCTTGCAAGTCACCTGCTAATGTAACAGTGGATGACTTTGTGTTCTCTGGCTATGTAGCTGCAAAGGCCAGAAAGCCTTTCAATGTTGGATTCACCACTGCATTTGTGAATAATTTTCCTGGTGTCAATGGACTTGGCATCTCTGTTTCAAGAGCAGACATGGATAAAGGTGGATCAGTCCCAATGCACACACATCCAGGGGTGAGTGAACTGATAATAGTGGTACAAGGTCAAGTCACTGCTGGATTCATGACATCGAATGCAGCTTATGTGAAGACGCTGAAACCGGGTGATCTTATGGTTTTCCCACAAGGACAAGTGCATTTTCAAGTGAACACTGGAGAGGGAAAAGCAACTCTCTTTGCTGCTTTCAGCAGCGCAAACCCTGGCGTGCAAACACTTGATTTCGTATTATTTAACAACAGCATGCCTTCTCAGCTAATTGCACAGTCTACCTTAATGGATGTTTCCGAAATCAAGAAGCTTAAGGCTCTTTTTGGTGGCTCGGGATAG 636 0.4355 MKMMIHILLFLLGLFSYAFSQGIVNDFCVADLKLPSTPSGYPCKSPANVTVDDFVFSGYVAAKARKPFNVGFTTAFVNNFPGVNGLGISVSRADMDKGGSVPMHTHPGVSELIIVVQGQVTAGFMTSNAAYVKTLKPGDLMVFPQGQVHFQVNTGEGKATLFAAFSSANPGVQTLDFVLFNNSMPSQLIAQSTLMDVSEIKKLKALFGGSG. 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11675 211 CDD cupin_OxOx 23 207 IPR001929 GO:0030145
Seca4g11675 211 SMART Cupin_1_3 60 201 IPR006045 -
Seca4g11675 211 Pfam Cupin 72 199 IPR006045 -
Seca4g11675 211 SUPERFAMILY RmlC-like cupins 22 204 IPR011051 -
Seca4g11675 211 PRINTS Germin signature 166 181 IPR001929 GO:0030145
Seca4g11675 211 PRINTS Germin signature 104 124 IPR001929 GO:0030145
Seca4g11675 211 PRINTS Germin signature 133 153 IPR001929 GO:0030145
Seca4g11675 211 Gene3D Jelly Rolls 21 211 IPR014710 -
Seca4g11675 211 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 16 203 - -
Seca4g11675 211 FunFam Auxin-binding protein ABP19a 21 210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11675 Seca-Chr4 256634255 256634890 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11675 24 211 Miscellaneous Gene Families AT1G72610 52.105 1.20e-69 209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11675 - - gmx:100818105 284.648
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g11675 4 256634255 256634890 Seca4g11675 4 256634255 256634890 ECH