Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11666 ATGGCGGTTTCCACCATAGCTTTATACGCGAGTCCACCGAGCAGTGTGTGTTCCACACCACACCCTTGCCAGATTAATGCGCACGCTTCCTATGATTTCGAATTGGGGTCTCGATCTTCGTCGCCGACGTCGACAGCGACGACGTCGACGTCGCAGAAGCCAGTAATGGGTGGCCTCTCGTGCCTCTTCTCCTCTCCGGCGACGGCGGTGAAGCACGCGCCGTTGTCGTCGAGCTTTTCCGGCGCCGTAGAGGAAGATGAATTGAAGGAACTGAGTAGCTCCTTCTCCTACTCGCCGAGCAAGTTTGGTGGGTCTTCTTGGAAGAGGGATCAGAGCCCTGTGTCTGTTTTCCATGGCCCCGTTTCGTGTAGCAGCAGCAGCTCCGTTCGTTCTTCCAGGAGTTCAACTACCCCTGTGAGGATCGGGTGTGAAAGGGGTACTGGGACCAGTGGCTTTTTTGATGGATTTGTGAGGAGTGCCTTGGGGTCTTCTTGCTTGGATTATGATTCTAGAAGTCTCAATGTTCGTGGTGGTGACTTAGATGTGGGTGCTTCTTCTGGACTTGTTGATGAGTTGACCTTCAATTTGGAGGATACTTTTGTGGAGGGTGGCTGTGAGCCCTATGCTAAGAAGTTGCTGCTGGGTGCTCAGTTGAGGCACAAGATCTTCTGTGAAGAGTTCGTTATCAAGGCTTTTTGTGAAGCCGAGAAAGCCCACAGAGGCCAGATGCGAGCTAGTGGGGATCCGTATTTGCAGCATTGTCTGGAAACTGCTGTGCTACTGGCTTTGATCGGTGCCAATTCCACTGTAGTTGCTGCGGGGCTTTTGCATGACACGCTTGATGATGCTTTTCTGACTTATGATTATATACTTGGGATGTTTGGTGCTGGAGTTGCTGATTTAGTTGAAGGGGTTTCTAAACTGAGTCACTTAAGCAAGCTGGCTCGAGACAACAATACAGCTAGCAAGTCAGTTGAAGCAGACCGCCTGCATACCATGTTCCTCGCCATGGCAGATGCAAGAGCTGTCCTCATTAAATTGGCAGATCGATTACATAATATGATGACGCTAGATGCATTGCCAGTGGCCAAGCAACAGAGGTTTGCAAAGGAGACTTTGGAGATTTTTGCACCTCTGGCTAATCGCTTAGGAATATCTAGTTGGAAGGAACAATTAGAAAATCTGTGTTTTAAACATCTCAACCCAGTCCAGCATGAGGAGCTTTCGTCAAAGCTTGTGGAGTCCTATGATGATGCAATGATTACTTCTGCAACAGAGAGATTAGAGCAAGCACTTAAAGATGAAGGCATATCTTATCATGTTATTTCTGGGCGGCATAAGAGCTTGTATAGCATTTATTGCAAAATGTTGAAGAAGAAATTAACCATAGATGATATCCATGACATTTATGGGCTGCGCTTGATTGTTGACAAGGAGGAAGACTGCTACAAAGCCTTAACAGTTGTTCACCAGTTATGGTCTGAGGTACCTGGAAAGCTGAAGGATTACATATGTTGCCCCAAGTTCAATGGGTATCAATCTCTGCACACTGTGGTGACGGGTGAAGGCAAGGTTCCCCTAGAAGTGCAAATTCGGACAAAAGATATGCATTTACAAGCTGAGTTCGGCTTTGCTGCACATTGGCGATACAAGGAAGATCACTGTCAGCATTCTTCATTTGTGCTGCAGATGGTGGAGTGGGCTCGATGGGTTGTCACCTGGCAGTGTGAGGCAATGAGTAAGGATTGTTCATCTGTCGGAAATGCTGATTCTATCAAGCCACCATGCAAGTTCCCTTCCCATGCTGATGATTGCCCATATTCTTACAAGCCTGATTGTGGTCAGAATGGCCCTGTGTTTGTTATCATGATTGAGAATGATAAGGTTTGTACTAGAAATTTAAGTACTGTTGAGTTTCACACATTCAGTTTCTTCACCCCGTGGTTTCAGTCTTAA 1956 0.4714 MAVSTIALYASPPSSVCSTPHPCQINAHASYDFELGSRSSSPTSTATTSTSQKPVMGGLSCLFSSPATAVKHAPLSSSFSGAVEEDELKELSSSFSYSPSKFGGSSWKRDQSPVSVFHGPVSCSSSSSVRSSRSSTTPVRIGCERGTGTSGFFDGFVRSALGSSCLDYDSRSLNVRGGDLDVGASSGLVDELTFNLEDTFVEGGCEPYAKKLLLGAQLRHKIFCEEFVIKAFCEAEKAHRGQMRASGDPYLQHCLETAVLLALIGANSTVVAAGLLHDTLDDAFLTYDYILGMFGAGVADLVEGVSKLSHLSKLARDNNTASKSVEADRLHTMFLAMADARAVLIKLADRLHNMMTLDALPVAKQQRFAKETLEIFAPLANRLGISSWKEQLENLCFKHLNPVQHEELSSKLVESYDDAMITSATERLEQALKDEGISYHVISGRHKSLYSIYCKMLKKKLTIDDIHDIYGLRLIVDKEEDCYKALTVVHQLWSEVPGKLKDYICCPKFNGYQSLHTVVTGEGKVPLEVQIRTKDMHLQAEFGFAAHWRYKEDHCQHSSFVLQMVEWARWVVTWQCEAMSKDCSSVGNADSIKPPCKFPSHADDCPYSYKPDCGQNGPVFVIMIENDKVCTRNLSTVEFHTFSFFTPWFQS. 652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11666 651 Pfam HD domain 235 385 - -
Seca4g11666 651 SUPERFAMILY HD-domain/PDEase-like 212 401 - -
Seca4g11666 651 CDD NT_Rel-Spo_like 424 542 IPR007685 GO:0015969
Seca4g11666 651 PANTHER GUANOSINE-3',5'-BIS DIPHOSPHATE 3'-PYROPHOSPHOHYDROLASE 113 631 - -
Seca4g11666 651 Gene3D Hypothetical protein af1432 217 401 - -
Seca4g11666 651 CDD HDc 248 376 IPR003607 -
Seca4g11666 651 ProSiteProfiles HD domain profile. 250 354 IPR006674 -
Seca4g11666 651 FunFam GTP pyrophosphokinase RelA 212 401 - -
Seca4g11666 651 FunFam GTP pyrophosphokinase RelA 402 534 - -
Seca4g11666 651 SMART RelA_SpoT_2 444 554 IPR007685 GO:0015969
Seca4g11666 651 SMART hd_13 246 363 IPR003607 -
Seca4g11666 651 SUPERFAMILY Nucleotidyltransferase 391 581 IPR043519 -
Seca4g11666 651 Gene3D Beta Polymerase, domain 2 404 534 IPR043519 -
Seca4g11666 651 Pfam Region found in RelA / SpoT proteins 444 553 IPR007685 GO:0015969
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11666 Seca-Chr4 256572904 256577561 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11666 245 551 EF-hand Containing Proteins AT3G17470 30.909 9.51e-40 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11666 K00951 - gmx:100787301 1074.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g11666 4 256572904 256577561 Seca4g11666 4 256572904 256577561 ECH