Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11649 ATGCTAGCGCAAATAGGGAGAGGTCACTATGATGCCGCTCATGATTTAGATTCAATTGACTTTCGGATGCAAAGGCTATTCAGTACTGCTTCATCAATTATAGTTGCTGATATAACCATCGAAAGTTTAGAAGGTTTTGATTCACTGGAGTTATTCCCAACTCATATTCCAGACCTATCATTCGGAAGTCCGTTTATCATATCAGGCAGATACAATGGAATTTTTCCTGAATCAGTTAAGGTCACTGGTACTTTGGCAGATATGACCAACTTCGTAGTGGACCTTAAAGCAAAAAGGGAAAAGGATATGCAACTCAGTAATGTCCTTTCAAAGAGACATATAGACCACGTCACCGCTCATGCCTGGTTATTAGAAAGTGAAGAGCTGGAGGAGAAGGTTTCTAAAATGAGCATTCAAAATAAAGTCCCGTCAGAGTATACCTGCATGAGCATGGTTCTTGTGCAGAAAGATGAAGGGAAGAAGACACCTAAGCCAATCCTGTTACAAAAGGCATACAGCAAACTTACCCTCCAGGGGTTGGAACATGACAGTCAGAAGTTATTCTTTGGAGGACTTAGTCTTGGATTTGGTGACTTGAAAGCAACCGCTGAGAACATTCCACCAGCAATCAAAGAAGCAAAACCATTTGAAGGACTATTGGAGAAGGCTGCTTCCAATTGTTGCGGTCGGTTGGTTGATACCTGTTGTGGCATGTGTCTGCTACGGACTTGCTCTTTTGTGAATGATCAATGCACCATCGTTTGCACTCAACTTTGTGCAGCCCTGGCTTGTTTTGAGCTAATTAAATGCTGTGTTGAGCTCTGCGAATGTGATTGCTTGTATTTGATTCTTCAAATGAGACCCCCTTATATTGGATTCATCAGAGTCCTTGTCCTTCTTGTTTTCGTCTCAGCTTACTGTTGCAGTTTTTCTACTCATGGGAGTACAAAGACAGAGAAAACTTTAGCAATTATAAAACCAGATGGATTGCTTGGTAACTACACAGATGATATCAAGAGAACAATTTCAGAATATGGTTTCAGCATTTTTAGGGAAAAGATTGTTCAACTTGATGAGGCCACTGCAAAAAGATTTTATGCAGAGCACTCATCTAAAAGCTTCTTTTCCAGCCTTATAAAATACATGACAAGTGGACCAGTATTAGTTATGGTTTTGGAGAAGGATAATGCTATTGCTGATTGGCGTGCCTTAATGGGCCCTACTGATGCAAGCAAGGCTAAGGTTACTCACCCTCACAGCATCAGAGCAAAATGTGGATTGGACATAGAAAAGAATTGTGTTCATGGTTCCGACTCTCCCAAATCTGCTCAAAGAGAGATACCATTTTTCTTCGGAGAGCTCTCTGCAGTCCCAACCCTATTATTCAATTTAACATTCAAAGGCTGCACCTTTTCTCTCTCCGCCTTTTCAGCCTTACGTTTATCAGAGCCCACAAGATGCAATTATACCTTTTCATATTTTAGGCGGGGAAGCTCAAGTGGTTCAGTTCAGATGTGTATAATGCTGAAGCCACAAGAGAAAATTGTTGCGAAGCCTGATAAGTTGTTGGGTACAGACGCACAGTGCAATTTTATGCATGGGTTTTTGAATATTTTCCCCTGA 1623 0.411 MLAQIGRGHYDAAHDLDSIDFRMQRLFSTASSIIVADITIESLEGFDSLELFPTHIPDLSFGSPFIISGRYNGIFPESVKVTGTLADMTNFVVDLKAKREKDMQLSNVLSKRHIDHVTAHAWLLESEELEEKVSKMSIQNKVPSEYTCMSMVLVQKDEGKKTPKPILLQKAYSKLTLQGLEHDSQKLFFGGLSLGFGDLKATAENIPPAIKEAKPFEGLLEKAASNCCGRLVDTCCGMCLLRTCSFVNDQCTIVCTQLCAALACFELIKCCVELCECDCLYLILQMRPPYIGFIRVLVLLVFVSAYCCSFSTHGSTKTEKTLAIIKPDGLLGNYTDDIKRTISEYGFSIFREKIVQLDEATAKRFYAEHSSKSFFSSLIKYMTSGPVLVMVLEKDNAIADWRALMGPTDASKAKVTHPHSIRAKCGLDIEKNCVHGSDSPKSAQREIPFFFGELSAVPTLLFNLTFKGCTFSLSAFSALRLSEPTRCNYTFSYFRRGSSSGSVQMCIMLKPQEKIVAKPDKLLGTDAQCNFMHGFLNIFP. 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11649 540 Gene3D - 317 459 IPR036850 -
Seca4g11649 540 SMART ndk_5 318 458 IPR034907 -
Seca4g11649 540 ProSitePatterns Nucleoside diphosphate kinases active site. 432 440 IPR023005 -
Seca4g11649 540 PRINTS Nucleoside diphosphate kinase signature 432 451 IPR001564 GO:0004550|GO:0006183|GO:0006228|GO:0006241
Seca4g11649 540 PRINTS Nucleoside diphosphate kinase signature 385 402 IPR001564 GO:0004550|GO:0006183|GO:0006228|GO:0006241
Seca4g11649 540 PRINTS Nucleoside diphosphate kinase signature 321 343 IPR001564 GO:0004550|GO:0006183|GO:0006228|GO:0006241
Seca4g11649 540 PRINTS Nucleoside diphosphate kinase signature 365 384 IPR001564 GO:0004550|GO:0006183|GO:0006228|GO:0006241
Seca4g11649 540 PANTHER INTER-ALPHA-TRYPSIN INHIBITOR HEAVY CHAIN-LIKE PROTEIN 1 278 - -
Seca4g11649 540 Pfam Nucleoside diphosphate kinase 319 453 IPR034907 -
Seca4g11649 540 SUPERFAMILY Nucleoside diphosphate kinase, NDK 318 458 IPR036850 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11649 Seca-Chr4 256319440 256329122 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11649 - - gmx:100811364 480.715
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g11649 4 256319440 256329122 Seca4g11649 4 256319440 256329122 ECH