Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11645 ATGTCTTGGGCAGGCCCTGAGGATATCTACCTTTCTACTTCACTTGCTAGTTATCTTGACAAGAAACTTCTTGTATTGCTGAGAGATGGTAGAAAGCTGATGGGGACACTTCGCTCTTTTGATCAATTTGCTAATGCGGTTCTTGAGGGTGCCTGTGAGAGGGTTATTGTTGGTGATCTGTATTGTGACATCCCTTTGGGTCTTTATGTAATCCGTGGGGAGAATGTTGTTCTAATTGGTGAGCTGGACTTGGAGAGGGAGGAACTTCCCCCACATATGACACGTGTTTCTACAGCAGAAATCCGGAGGGTAAATATACCTAAATTGACACTTCTTTATTTAATTGATGTTCTTTGTGTCTATTTTCTGTCACCTTGTTTTTGCCCCCTCACTTTACCGAAGATATGTTGTGACATTCATTGTCAAAGTGCCCATATTCTCAATGAAACAGATTGA 456 0.4167 MSWAGPEDIYLSTSLASYLDKKLLVLLRDGRKLMGTLRSFDQFANAVLEGACERVIVGDLYCDIPLGLYVIRGENVVLIGELDLEREELPPHMTRVSTAEIRRVNIPKLTLLYLIDVLCVYFLSPCFCPLTLPKICCDIHCQSAHILNETD. 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11645 151 SMART Sm3 13 81 IPR001163 -
Seca4g11645 151 Gene3D - 12 109 - -
Seca4g11645 151 Pfam LSM domain 14 80 IPR001163 -
Seca4g11645 151 CDD LSm1 12 82 IPR034104 GO:0000956
Seca4g11645 151 PANTHER LSM1 8 103 IPR044642 -
Seca4g11645 151 SUPERFAMILY Sm-like ribonucleoproteins 13 83 IPR010920 -
Seca4g11645 151 ProSiteProfiles Sm domain profile. 10 85 IPR047575 GO:0003723
Seca4g11645 151 FunFam U6 snRNA-associated Sm-like protein LSm1 12 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11645 Seca-Chr4 256303584 256307114 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11645 K12620 - gmx:100306352 202.216
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g11645 4 256303584 256307114 Seca4g11645 4 256303584 256307114 ECH