Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11609 ATGAGCAGAGTTGGTGATTTGTTGAACGTGGATTTGGGTGCTGCAGTGAACAATCTGTTCAATATTCCTGAAACAGTTGAAAAAATCATGTTTCCTCATGACAACAACCAAGAGAACAGAGGGGTTTCTACCATTCCAGTGGACATTTTGGACACTCCCAAGGACTATATATTCTTCATGGATGTTCCTGGTCTCTCCAAGTCTGAAATTCAGCAGGTGACAGTTGAAGATGAGAACACACTTGTTATAAGGAGCAATGGGAAAAGGAAACGCCAAGATGCTGAGGATGAAAGCTGCAAGTACCTTAGGCTGGAAAGGAGAACACCTCAGAATTTGCTGAGAAAGTTCTGTTTGCCACAAAATGCTAATGTGTCAGCAATCACAGCTAAATGTGAGAATGGGGTTCTTACTGTGACCTTAGAGAAGCACCCTCCACCTCCAAAATCCAAAACAGTTCAAGTTGCCATTGCCTAA 474 0.4262 MSRVGDLLNVDLGAAVNNLFNIPETVEKIMFPHDNNQENRGVSTIPVDILDTPKDYIFFMDVPGLSKSEIQQVTVEDENTLVIRSNGKRKRQDAEDESCKYLRLERRTPQNLLRKFCLPQNANVSAITAKCENGVLTVTLEKHPPPPKSKTVQVAIA. 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11609 157 Pfam Hsp20/alpha crystallin family 48 154 IPR002068 -
Seca4g11609 157 SUPERFAMILY HSP20-like chaperones 35 149 IPR008978 -
Seca4g11609 157 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 38 157 IPR002068 -
Seca4g11609 157 CDD ACD_sHsps-like 48 142 - -
Seca4g11609 157 Gene3D - 14 156 IPR008978 -
Seca4g11609 157 PANTHER HEAT-SHOCK PROTEIN 20 FAMILY MEMBER 15 154 IPR031107 -
Seca4g11609 157 FunFam 17.4 kDa class III heat shock protein isoform A 9 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11609 Seca-Chr4 255947113 255948513 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11609 K13993 - gmx:100803161 251.521
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g11609 4 255947113 255948513 Seca4g11609 4 255947113 255948513 ECH