Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11580 ATGGATGCAGTGGACAAGACTTTTTCTGATCTTGTCAGCATCTTTAAATCATGGATTCCCTGGCGATCTGAGCCAGCAAATGTGTCTAGGGATTTTTGGATGCCCGACCGCAGTTGTAGAGTATGCTACGAGTGTGATTCCCAGTTCACCTTATTTAATCGCAGACACCATTGTCGTCTTTGTGGAAGAATTTTCTGTGCCAAGTGTACAACAAACTCGGTTCCTGCCCCATTAGACAGCCAAGGGAATTCTTTGGATGAGTGGGAAAAGATCCGTGTATGCAATTATTGTTACAAGCAATGGGAGCAGGGCATAGTTACTTTTGATAACGGTATTCAGGTTTCCAATCTAGATCGTAGTCCTTCAATGTCAACTTCAAGTTTGGCTAGCAGTAAAACCAGTGGCACTGCTAACAGTAGTAACGTTACTCTTTGCTCCATGCCTTATTCAGTTGGTTCTTATCAACAAATGCAACAGGGTTCCCCTTATTCAGTTGGGCCTTATCAACAAATGCAACAAGGTTCCTGTCTGAACCTGCATCAATCACCTATGAGGGGAAAAGACACTAATAGAGAAGGTTTATCAGAATTAGGGGGGAGGAATGATCTTGTAGCAGACCTAGGAGATTCATTACCAAAACAATACAGGTTCTCAATAAACAGGATTGAGGATGATGAGGATGAGTATGGCATATATCGGTCACATTCTGATATGAGGCATTATCCTCAAGTGAATAGCTACTATGGACAAGCTGAGCTTGATGGGATAAGTAACATTGATGGCTCACAAAAGGTGCATCCTGATGGAGAAAACAGTAATGCCAAACTCTCTTCAAACTACAATTTTGACACACAGGGTTTGGAAGGAACATCAGTTGTTGCAAAAAATGAAGATGAACCGGACATCTGTGATGAAAATGAAGCACCTTCCTCATTATATGTTTCAGAGGATGTCGATGTTGAACCTGTTGACTTTGAAAATAATGGACTTCTCTGGCTCCCTCCTGAACCAGAAGATGAAGAAGATGAAAGGGAAGCTATTTTGTTTGATGATGATGATGATAATGATGGGAATGCCATTGGAGAATGGGGTTATCTGCGCAGTTCAAGCAGTTTTGGAAGTGGAGAGTATCGACACAGAGATAGGTCAAGTGAGGAGCACAAGAAGGTAATGAAGAATGTAGTTGATGGGCACTTTAGGGCATTGGTATCTCAGCTGTTACAGGTTGAGAACCTACCTGTTGAAGACAATGACAAAAACAGTTGGTTGGAAATAATCACCTCTCTGTCCTGGGAAGCTGCTACTTTATTAAAACCGGATATGAGCAAAGGTGGAGGGATGGATCCAGCTGGTTATGTAAAAGTCAAATGCATAGCATGTGGGAGCCGCATTGAGAGTGTGGTGGTTAAAGGAGTCGTGTGTAAGAAAAATGTGGCTCATCGGCGAATGACGTCAAAATTTGATAAACCTCGTTTGTTGATCCTTGGAGGGGCTCTTGAGTACCAGCGTGTTTCCAACCTCTTATCTAGTGTAGATACCCTATTGCAGCAGGAAATGGACCATCTGAAGATGGCAGTGGCAAAGATAGCTGCACACCAGCCAAATATCCTTTTGGTAGAGAAATCAGTTTCCCGATATGCACAGGAATATCTTCTTGCAAAAGATATATCTCTGGTTCTCAATGTCAAGAAACCACTTTTGGAGCGCATAGCACGTTGCACAGGCACTCAAATAGTGCCTTCAATCGATCATCTCTCATCACAAAAGTCAGGTTATTGTGAAACATTTCATGTTGAAAAGTTTCTTGAAGATCTAAGCAGTGCTGGTCAGGGTGGGAAAAAAACAGTGAAAACATTGATGTTTTTTGAAGGCTGCCCAAAACCATTAGGTTGCACAATTTTACTTAAAGGAGCTGATAAGGATGAACTGAAGAAGGTAAAGCATGTGGTTCAGTATGGAGTTTTTGCAGCTTACCATTTGGCTATGGAGACATCTTTTCTCGCTGATGAAGGAGTCTCTCCACTGCCAGAACTTCCATTAAACAGTCTGGCCCTTCCTAATAAATCATCATCCATTCAGAGGTCCATCTCAACAGTTCCTGGTTTCAGTGTTCCAGGCAATGAAAAGTCTCAGGGGCTTGAAACTGACACTGAACCACGGAGAACAAAAAGTGTCACAGTTTCTGATCTAGCTTCATCAGCCTGCAATACAGGATCCTGCATATCTAATGGTGCTTCTCAATCTATGCCAACTGGATCAAGTCTCAACTATTCAACTGCCATGTACCCCTCCATTGTTGCTTCAGGAAACGCAATCCCAGAATCATACGATAAGACGCTTCTTTCATGCACTAGTAAAGAGAGAAATGGAATGGACTCCAAACAACCTCTAGTGGAAGAAACTTCTGTGGTGGACAATTCTCTGGTAGTCATGGATGATCCTTCTGTAAATGACTCTGAAACCGCGGAGAAATTTTATCAAGGCATTTTAGCTGACAATCCTCAAAACGGTCATAGCACAATCTCTGCAAACCAATTAAGTGGTTCAGAGTCATTATCTCCAAAATATGTTCAAAACCATCCTGAGAAGCTCGGAATCACAAACGAAGAGCCAATCCCTCAAAAAGAAGAGTTTCCTCCATCACCCTCTGACCATCAAAGCATTTTGGTGTCTTTGTCCTCCCGGTGTGTATGGAAGGGAACTGTGTGTGAGAGGTCCCATCTATTTCGAATTAAATACTATGGCAGCTTTGACAAACCATTAGGTCGGTTTCTGCGGGACCATTTATTTGATCAGAGTTATCGATGCCATTCTTGTGAAATGCCTTCAGAAGCACATGTGCATTGTTATACTCATCGACAGGGAACACTCACCATATCTGTCAAGAAACTACCAGAAATTATCCTACCTGGTGAAAGGGAGGGAAAGATTTGGATGTGGCATAGGTGCTTGCGGTGTCCGAGAATCAATGGATTTCCTCCTGCTACACAGAGAATAGTAATGTCTGATGCTGCTTGGGGTTTATCATTTGGGAAATTTTTGGAGCTCAGTTTCTCAAACCATGCTGCAGCCAGCAGGGTGGCAAGCTGTGGCCATTCTTTACACAGAGACTGTCTTCGTTTTTATGGATTCGGGAAAATGGTTGCTTGTTTTCGATATGCATCAATTGATGTTCACTCAGTCTACCTTCCTCCACACAAACTGGATTTTGATTATGGGAATCAAGATTGGATACAAAAAGAATCAGATGAGGTGGTCAACCGGGCGGAGCTTTTATTCTCTGAAATACTCAATGGTCTTAGACAAATTGGAGAGAAAAGACCCACCGCAGTCCTAATCAATAGTGGTGTTAAAACTCCTGAATTAAGACGCCAAGTTGCTGAACTGGAGGGGATGTTGCAAAAGGAGAAACTAGAATTTGAGGAAACTCTTCAAAAGATTTTGAACCAAGAAAAGAGAAATGGCCAACCTGGGATTGATATTCTTGAAATTAATCGATTACGGAGGCAGTTACTTTTCCAATCATATATGTGGGATCACCGCCTTATTTACGCAGCCAGCTTAGCCAATTCCAACAATGAAACTGGGTTAAGCAGTTCAATTTCTGTGGATAAGGAAATGCCTACTGATGAAAATCAGATGAGTGCGGTTTCCATGGCAGGAAGGGGATTCAGTAGCGTTGACTCTGTTCATGGTGATCCAAAACTTAACAAAAGCCCTAGCCTTGGAGGAGGAGGTGGAGTAGTTGATGGCAGAAATTCCCAATCTGATGCATTTCATCAAGAAATTGACATGGAAAAATATAAACAGCATGAGAAAGAAGACCAATCTAATCTTTCAATCAGCAAAAGCATAAGTGATCAATCTGATCTTTTAGAACCTGAATTTGGTGTTCGCAGAGCCCTCTCTGATGGGCCATTTCCTGTCATGCCTAGTTTGTCTGATACACTTGATGCAAAATGGACAGGTGAAAACCACTCAGGATTTGGAATTCAAAAGGATAACACTTCTGTAAATCCCGATATATTTATGGCAGATGCTTTGACAACCACTGTACAAAAAGAAACATACTATCTAGGGGATCGCACAGAAGACCAGAATGGCTCCAGGAGTATCTATTCTACTTCTAAAGGTCATGATAATATGGAAGACTCTTTAAGCTGGCTAGGAATGCCCTTCATAAACTTCTATCGCCAATTTAACAAGAATTTTTTTGCTAGTACACAGAAGTTTGATACACTAGTTGATTACAATCCTGTTTTTGTATCATGCTTCCGGAAGCTGGAACTCCAAGGTGGGGCAAGGCTGCTTCTTCCAATTGGTGTTAATGACACTGTAATTCCAATATATGATGATGAACCCTCAAGTATTATAGCTTATGCCTTGACATCACCGGAATATCATTTCCAGTTGGCTGATGAAGGAGAGAAACCAAAAGAAGGAATTGAGTTGGCTTCATCATATTTTTCTGACTCAGGCACCTTCCAGTCATTTACATCTACTGATGAGACAGCTTTTGATTCTCAGAAAAGTTTTGGGTCAATAGAGGATATGCTATTGTCCATGTCTGGGTCTCGGAGTTCATCAATGCTGGACCCGGTGTTATATACAAAGGCTATGCATGCCAGAGTTTCCTTTGGAGAAGATGGTCCCCTTGGCAAGGTAAAATATTCTGTGACTTGTTACTATGCCAAGCGATTTGAAGCCTTAAGAAGGGTCTGTTGTCATTCAGAGCTTGACTATATAAGGTCTCTGAGTCGCTGTAAGAAATGGAGAGCTCAAGGTGGGAAGAGTAATGTATTCTTTGCAAAAACCTTGGATGATCGATTTATCATCAAACAAGTTACGAAAACAGAGCTTGAGTCATTCATTAAATTTGGTCCTGAATACTTCAAGTACCTTTCTGAATCCATAGGCACAGGAAGTCCAACATGCCTGGCAAAGATTCTTGGCATATACCAGGTTTCATCAAAGCATCTTAAAGGAGGGAAAGAATCAAGGATGGATGTTCTGGTGATGGAGAATCTTCTATTTAGGAGGAACGTGACACGACTTTATGATCTTAAAGGATCTTCCAGGTCTCGGTATAATGCAGATAGTACCGGGAAAAACAAAGTTCTGCTTGACCAGAACTTGATTGAAGCAATGCCAACTTCTCCTATTTTTGTGGGAAACAAAGCGAAACGATTGTTAGAGAGAGGTGTCTGGAATGATACTGGTTTTCTTGCTTCAGTTGATGTAATGGACTATTCTTTACTTGTTGGGGTGGATGAAGAGAAGCATGAACTGGTTCTTGGAATCATTGATTTCATGAGGCAGTATACATGGGACAAGCATCTTGAAACATGGGTAAAAGCTTCAGGCATCCTTGGAGGACCAAAGAACACATCTCCAACAGTTATATCACCAAAGCAATACAAGAAAAGGTTCCGGAAAGCAATGACCACTTACTTTCTCATGCTTCCAGATCAGTGGTCTCCACCATCTATTATTCCTAGTCATTCACAGTCTGATTTAGGTGAAGACAACTCACAATCTAGGACTCCAGCTGAATGA 5556 0.4165 MDAVDKTFSDLVSIFKSWIPWRSEPANVSRDFWMPDRSCRVCYECDSQFTLFNRRHHCRLCGRIFCAKCTTNSVPAPLDSQGNSLDEWEKIRVCNYCYKQWEQGIVTFDNGIQVSNLDRSPSMSTSSLASSKTSGTANSSNVTLCSMPYSVGSYQQMQQGSPYSVGPYQQMQQGSCLNLHQSPMRGKDTNREGLSELGGRNDLVADLGDSLPKQYRFSINRIEDDEDEYGIYRSHSDMRHYPQVNSYYGQAELDGISNIDGSQKVHPDGENSNAKLSSNYNFDTQGLEGTSVVAKNEDEPDICDENEAPSSLYVSEDVDVEPVDFENNGLLWLPPEPEDEEDEREAILFDDDDDNDGNAIGEWGYLRSSSSFGSGEYRHRDRSSEEHKKVMKNVVDGHFRALVSQLLQVENLPVEDNDKNSWLEIITSLSWEAATLLKPDMSKGGGMDPAGYVKVKCIACGSRIESVVVKGVVCKKNVAHRRMTSKFDKPRLLILGGALEYQRVSNLLSSVDTLLQQEMDHLKMAVAKIAAHQPNILLVEKSVSRYAQEYLLAKDISLVLNVKKPLLERIARCTGTQIVPSIDHLSSQKSGYCETFHVEKFLEDLSSAGQGGKKTVKTLMFFEGCPKPLGCTILLKGADKDELKKVKHVVQYGVFAAYHLAMETSFLADEGVSPLPELPLNSLALPNKSSSIQRSISTVPGFSVPGNEKSQGLETDTEPRRTKSVTVSDLASSACNTGSCISNGASQSMPTGSSLNYSTAMYPSIVASGNAIPESYDKTLLSCTSKERNGMDSKQPLVEETSVVDNSLVVMDDPSVNDSETAEKFYQGILADNPQNGHSTISANQLSGSESLSPKYVQNHPEKLGITNEEPIPQKEEFPPSPSDHQSILVSLSSRCVWKGTVCERSHLFRIKYYGSFDKPLGRFLRDHLFDQSYRCHSCEMPSEAHVHCYTHRQGTLTISVKKLPEIILPGEREGKIWMWHRCLRCPRINGFPPATQRIVMSDAAWGLSFGKFLELSFSNHAAASRVASCGHSLHRDCLRFYGFGKMVACFRYASIDVHSVYLPPHKLDFDYGNQDWIQKESDEVVNRAELLFSEILNGLRQIGEKRPTAVLINSGVKTPELRRQVAELEGMLQKEKLEFEETLQKILNQEKRNGQPGIDILEINRLRRQLLFQSYMWDHRLIYAASLANSNNETGLSSSISVDKEMPTDENQMSAVSMAGRGFSSVDSVHGDPKLNKSPSLGGGGGVVDGRNSQSDAFHQEIDMEKYKQHEKEDQSNLSISKSISDQSDLLEPEFGVRRALSDGPFPVMPSLSDTLDAKWTGENHSGFGIQKDNTSVNPDIFMADALTTTVQKETYYLGDRTEDQNGSRSIYSTSKGHDNMEDSLSWLGMPFINFYRQFNKNFFASTQKFDTLVDYNPVFVSCFRKLELQGGARLLLPIGVNDTVIPIYDDEPSSIIAYALTSPEYHFQLADEGEKPKEGIELASSYFSDSGTFQSFTSTDETAFDSQKSFGSIEDMLLSMSGSRSSSMLDPVLYTKAMHARVSFGEDGPLGKVKYSVTCYYAKRFEALRRVCCHSELDYIRSLSRCKKWRAQGGKSNVFFAKTLDDRFIIKQVTKTELESFIKFGPEYFKYLSESIGTGSPTCLAKILGIYQVSSKHLKGGKESRMDVLVMENLLFRRNVTRLYDLKGSSRSRYNADSTGKNKVLLDQNLIEAMPTSPIFVGNKAKRLLERGVWNDTGFLASVDVMDYSLLVGVDEEKHELVLGIIDFMRQYTWDKHLETWVKASGILGGPKNTSPTVISPKQYKKRFRKAMTTYFLMLPDQWSPPSIIPSHSQSDLGEDNSQSRTPAE. 1852
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11580 1851 SMART PIPK_2 1528 1819 IPR002498 GO:0016307|GO:0046488
Seca4g11580 1851 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 24 107 IPR013083 -
Seca4g11580 1851 CDD Fab1_TCP 400 671 - -
Seca4g11580 1851 MobiDBLite consensus disorder prediction 1268 1292 - -
Seca4g11580 1851 Pfam Phosphatidylinositol-4-phosphate 5-Kinase 1593 1760 IPR002498 GO:0016307|GO:0046488
Seca4g11580 1851 ProSiteProfiles Phosphatidylinositol phosphate kinase (PIPK) domain profile. 1494 1818 IPR002498 GO:0016307|GO:0046488
Seca4g11580 1851 MobiDBLite consensus disorder prediction 258 283 - -
Seca4g11580 1851 Pfam TCP-1/cpn60 chaperonin family 418 661 IPR002423 GO:0005524
Seca4g11580 1851 MobiDBLite consensus disorder prediction 697 712 - -
Seca4g11580 1851 MobiDBLite consensus disorder prediction 264 283 - -
Seca4g11580 1851 SMART fyve_4 28 103 IPR000306 GO:0046872
Seca4g11580 1851 Pfam FYVE zinc finger 33 101 IPR000306 GO:0046872
Seca4g11580 1851 Gene3D Phosphatidylinositol Phosphate Kinase II Beta 1517 1675 IPR027484 -
Seca4g11580 1851 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 36 102 IPR017455 -
Seca4g11580 1851 FunFam 1-phosphatidylinositol-3-phosphate 5-kinase FAB1B 24 109 - -
Seca4g11580 1851 FunFam 1-phosphatidylinositol 3-phosphate 5-kinase FAB1 1677 1819 - -
Seca4g11580 1851 MobiDBLite consensus disorder prediction 697 726 - -
Seca4g11580 1851 MobiDBLite consensus disorder prediction 1194 1213 - -
Seca4g11580 1851 SUPERFAMILY FYVE/PHD zinc finger 31 102 IPR011011 -
Seca4g11580 1851 Coils Coil 1126 1153 - -
Seca4g11580 1851 MobiDBLite consensus disorder prediction 119 139 - -
Seca4g11580 1851 SUPERFAMILY GroEL apical domain-like 465 637 IPR027409 -
Seca4g11580 1851 MobiDBLite consensus disorder prediction 1224 1254 - -
Seca4g11580 1851 Gene3D - 1677 1819 - -
Seca4g11580 1851 CDD FYVE_PIKfyve_Fab1 32 99 - -
Seca4g11580 1851 FunFam 1-phosphatidylinositol-3-phosphate 5-kinase FAB1B 1520 1675 - -
Seca4g11580 1851 CDD PIPKc_PIKfyve 1555 1818 IPR044769 GO:0000285
Seca4g11580 1851 Gene3D GroEL 465 637 IPR027409 -
Seca4g11580 1851 MobiDBLite consensus disorder prediction 1830 1851 - -
Seca4g11580 1851 FunFam 1-phosphatidylinositol 3-phosphate 5-kinase isoform X1 464 637 - -
Seca4g11580 1851 PANTHER 1-PHOSPHATIDYLINOSITOL 3-PHOSPHATE 5-KINASE-RELATED 22 1831 - -
Seca4g11580 1851 SUPERFAMILY SAICAR synthase-like 1551 1818 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11580 Seca-Chr4 255525544 255534420 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11580 2 1851 EF-hand Containing Proteins AT3G14270 60.611 0.0 2112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11580 K00921 - gmx:100819364 3148.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g11580 4 255525544 255534420 Seca4g11580 4 255525544 255534420 ECH