Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11578 ATGGACCTCCCCAACCACAAATTCTTTCAAGCTTCATCTGTATTGGTACCACATGGGGAATCACCAATTGAGAGCAACATGAGCTTGTATGGGAAAAGCAAAGACAACAACCCTTTTGTAGATGCCTTCCCTGACCCACTTTGCAAGCTCAATCTTAGGGAAACCTCTGAGTTTGTTAAGTCATTTCCAGTGTCTAATGGGAATGCAGAAAGTAGAGGCTTTCTTGAGGTTTCAGCACAGAGGAGAGAAGGGGGCAATGACTCTGTCACACAACAGAGGAGGCTTGAGGCTCCCCCCACTCCTGGTAGACCTGTTTTCAGCTTCAGTTCTGGTAGCCTTGGAAGAAACCTTTCAAGAAAGGGCTTTCCTTCCAAATGGGATGATGCAGAGAAATGGCTCATGAGCAGCTCTTGCCATGACTCACCTGCTCATAACACTGTGAATATGAAGGTATCAGAGTCCTCAAAGATCAGTACCAGACAATGTGATAACTTTAAGCAGCAAATGGAGAATTTCGCGGAGAAATCGAGGGTCATAGAGGAAAAGGTGTCCAAAGCTGTTCCTAACTTTCAAAGGTCTCCATCTTTGGACCCCCATAACACAGTTGGTGTCTTCAATGGGGTCTCATGCCCTACAGACATAGTACTAAAAGATAAGTTCACAGACAGCATAGAGCCCATTTTGCCAAATTTCAGATATTCAGAGCCAACTAAAGAAGGGTTCTTGTTTAGGAACCCAGCTGGTGAGGCAATGCAAGATGCTTGCACTGAAGTGGTTCAACATAGAGATGTTGGGACTGAGATGACTCCTATGGGAAGTTCCACAACTTCAAGATGCCACACCCCATTTAAGAGTTCATCTCCTGCACGCCATAACACTCCTGCAAATAGGTCAGGACCATTGGCCTTGGCTAACCCCAATAGCACTGGATGCACTCTTGACATTATTAAGCTGGAAGAGTGCCATTTTTCTAAACTACAACTAGGAACACAGTATGATATAGTCACTTCAAATTGGAGCTCAAGTGAAGAGGAAGAAAAGGAAATATCAAAAAGCTTGAGGCATAATTCTAGCCAGAAAGCTGATTCAGACTGCATTGCTGCTACATGGGAAGAAGAGGAGAAGACCAAGTGCTGTCTTAGGTATCAGAGAGAAGAAGCAAAAATCCAAGCTTGGGTAAACCTCCAAAATGCTAAAGCAGAAGCCCAATCAAGAAAGCTTGAGGTGAAAATACAAAAGATGAGAGCAAACCTGGAAGAGAAGTTGATGAAGAGGATGTCAGTGGTTCACAGGAAAGCTGAGGAATGGAGAGCAACAGCTAGACAACAGCATTTGGAGCAAATTCAGAGAGCTGCTGAACAAGCTAAAAAGATGAATCATAGGCATACCTCACAATTTTCGAGGCACACTTCATGTGGTTGCTTCCCTTGCAATAACAACCATCATTAA 1449 0.4396 MDLPNHKFFQASSVLVPHGESPIESNMSLYGKSKDNNPFVDAFPDPLCKLNLRETSEFVKSFPVSNGNAESRGFLEVSAQRREGGNDSVTQQRRLEAPPTPGRPVFSFSSGSLGRNLSRKGFPSKWDDAEKWLMSSSCHDSPAHNTVNMKVSESSKISTRQCDNFKQQMENFAEKSRVIEEKVSKAVPNFQRSPSLDPHNTVGVFNGVSCPTDIVLKDKFTDSIEPILPNFRYSEPTKEGFLFRNPAGEAMQDACTEVVQHRDVGTEMTPMGSSTTSRCHTPFKSSSPARHNTPANRSGPLALANPNSTGCTLDIIKLEECHFSKLQLGTQYDIVTSNWSSSEEEEKEISKSLRHNSSQKADSDCIAATWEEEEKTKCCLRYQREEAKIQAWVNLQNAKAEAQSRKLEVKIQKMRANLEEKLMKRMSVVHRKAEEWRATARQQHLEQIQRAAEQAKKMNHRHTSQFSRHTSCGCFPCNNNHH. 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11578 482 MobiDBLite consensus disorder prediction 79 105 - -
Seca4g11578 482 Coils Coil 441 465 - -
Seca4g11578 482 Coils Coil 162 182 - -
Seca4g11578 482 CDD UDM1_RNF168_RNF169-like 401 458 - -
Seca4g11578 482 MobiDBLite consensus disorder prediction 267 304 - -
Seca4g11578 482 Pfam Remorin, C-terminal region 367 464 IPR005516 -
Seca4g11578 482 Coils Coil 397 424 - -
Seca4g11578 482 PANTHER OS02G0116800 PROTEIN 83 475 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11578 Seca-Chr4 255509366 255513430 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11578 - - gmx:100776089 700.279
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g11578 4 255509366 255513430 Seca4g11578 4 255509366 255513430 ECH