Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11569 ATGGCGGAAAAATCATGTGTCAAGCGACTTCAGAAGGAATATAGAGCCCTTTGTAAAGAGCCAGTTTCCCATGTTGTGGCTCGTCCTTCACCAAGTGATATTCTTGAGTGGCATTACGTGTTGGAGGGAAGCGAAGGAACACCTTTTGCAGGTGGATATTACTATGGAAAAATCAAGTTTCCTCCAGAATATCCATATAAACCTCCTGGAATCAGCATGATTACTCCTAATGGACGGTTCATGACACAGAAAAAGATCTGTTTATCTATGAGCGATTGTAAGTTCTTTAATCTGTTAGGAGCACAAATCTCTTTAATCTGTTGGGAGCACAAATCGATTAGTATCATGAATTACCCAGATTATTACTATTTAATATTTCTGTGGGTTTTGCTGCTTTTGCAGTTCATCCTGAAAGTTGGAATCCTATGTGGTCTGTATCAAGGTCAGGACATTTCAAGTTACAAAGTTCTTTTATGTGCTTTACTTTGTTTTGTTTTTCTAACTATTATTTGA 513 0.3762 MAEKSCVKRLQKEYRALCKEPVSHVVARPSPSDILEWHYVLEGSEGTPFAGGYYYGKIKFPPEYPYKPPGISMITPNGRFMTQKKICLSMSDCKFFNLLGAQISLICWEHKSISIMNYPDYYYLIFLWVLLLLQFILKVGILCGLYQGQDISSYKVLLCALLCFVFLTII. 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11569 170 Gene3D Ubiquitin Conjugating Enzyme 1 110 IPR016135 -
Seca4g11569 170 SUPERFAMILY UBC-like 5 92 IPR016135 -
Seca4g11569 170 CDD UBCc 7 92 IPR000608 -
Seca4g11569 170 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 6 92 - -
Seca4g11569 170 Pfam Ubiquitin-conjugating enzyme 9 76 IPR000608 -
Seca4g11569 170 SMART ubc_7 8 134 - -
Seca4g11569 170 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 5 170 IPR000608 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11569 Seca-Chr4 255393154 255395982 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11569 1 92 Miscellaneous Gene Families AT1G17280 93.478 2.40e-63 193
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11569 K04554 - qsu:112014125 205.297
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g11569 4 255393154 255395982 Seca4g11569 4 255393154 255395982 ECH