Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11548 ATGGGGGGAAAGAGGAAGAATAACGAGGTTTCACTTAGCGATGAAGAAAAATCGAACAAAAAAGCGAAGAGGAAGAAGGAGGAGCTGCTTCCTTCGATGATCAAGAACAAGGACAAGAGATCAGAGGTTCACGCCAAACTCAAGCGCCAGAAAAAACTTGAAAAGCGCGCCAAATCCAATGCTCGAGATGCTGCTGTCAAGAGAGCTCTCGAGCTCGGTGAGGAGTCGCTCTTGTTGTTTGGTTTGAATTTGTTGTTTATTTGGCGTTTCTTTGCGTTATTGCAGCCTCCCGAGAAGAAGGTCCCTCGTACCATTGAGAACACTAGGGAATTCGACGAGACCATTTGCAAGCCTGATGACGAAGAGTTGTTTGCTGGAAATGATGCTGATGAATTCAGTTCAATTTTAAATCAGCAACAAATTCCCAAGATATTAATCACCACTTGCCGCTTCAATTCTACTAGGGGACCTGCTTTTATATCAGAATTGCTTTCAGTTATACCAAATGCACATTACTTCAAGAGAGGAACCTATGATTTAAAAACGATTGTAGAATATGCAAACAATAAGGACTTCACTTCTATCATAGTTGTTCACACCAATCGTAGGGAACCAGATGCTCTCTTAATCATTGGCTTGCCTGATGGACCTACTGCTCATTTCAAACTCTCAAAGCTTGTTTTGCGCAAGGATATTAAGAATCATGGAACTCCAACCAGTCACAAGCCTGAGCTTGTGTTGAATAACTTTACAACACGTCTAGGGCATCGAATTGGAAGATTGATACAGTCACTTTTCCCGCAAAATCCAGAATTTAAAGGCCGGCGAGTAGTCACCTTCCACAACCAGAGAGACTTCATATTCTTTCGGCATCATCGGTACATTTTTGAAACTAAAGAAATTAAAAAGACTGAGTCTAAAGGTAAAAAGGACAACGATGACAAGAGTGAGAAAGTTCCTGAACAGAAAACAATTGCGCGTCTTCAGGAATGTGGCCCTCGTTTCACATTGAAATTGATTAGCCTGCAGAATGGAACATTTGACACTAAGGGTGGAGAATATGAGTGGGTTCACAAGCCGGAAATGGACACAAGCCGGAGGAGATTTTTCCTATGA 1116 0.4203 MGGKRKNNEVSLSDEEKSNKKAKRKKEELLPSMIKNKDKRSEVHAKLKRQKKLEKRAKSNARDAAVKRALELGEESLLLFGLNLLFIWRFFALLQPPEKKVPRTIENTREFDETICKPDDEELFAGNDADEFSSILNQQQIPKILITTCRFNSTRGPAFISELLSVIPNAHYFKRGTYDLKTIVEYANNKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHGTPTSHKPELVLNNFTTRLGHRIGRLIQSLFPQNPEFKGRRVVTFHNQRDFIFFRHHRYIFETKEIKKTESKGKKDNDDKSEKVPEQKTIARLQECGPRFTLKLISLQNGTFDTKGGEYEWVHKPEMDTSRRRFFL. 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11548 371 MobiDBLite consensus disorder prediction 305 324 - -
Seca4g11548 371 MobiDBLite consensus disorder prediction 1 58 - -
Seca4g11548 371 MobiDBLite consensus disorder prediction 305 325 - -
Seca4g11548 371 FunFam Ribosome production factor 1 142 338 - -
Seca4g11548 371 MobiDBLite consensus disorder prediction 1 43 - -
Seca4g11548 371 Pfam Brix domain 154 340 IPR007109 GO:0006364|GO:0019843
Seca4g11548 371 PANTHER U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN PROTEIN IMP4 30 371 IPR044281 GO:0006364|GO:0042134
Seca4g11548 371 Gene3D - 142 338 - -
Seca4g11548 371 SMART Brix_2 145 342 IPR007109 GO:0006364|GO:0019843
Seca4g11548 371 SUPERFAMILY Class II aaRS ABD-related 142 345 - -
Seca4g11548 371 ProSiteProfiles Brix domain profile. 142 348 IPR007109 GO:0006364|GO:0019843
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11548 Seca-Chr4 255162474 255167279 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11548 K14846 - gmx:100791194 584.334