Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11547 ATGGTGGTAGCTACAGGTTCTAAGTTCAATTTGAGAAGAGGGAACTGTTCTTCTCATAATATTATCAATGATTATAGCAGTGATGGAGAACTTTCTAGAATCAATAAAAGTGGGTGTTTTTCATCAATGGCAGAGGTGGATAAAGACCCTTCCTGCGTTTCATTCACCACTTTCAACATCCTGGCTCCGATTTACAAACGGATTGATCCACAGAACCAGGGCCTCCGAGAGAGTGAGTTCAGATCATTCTGGTTGGCCAGGAATGAAAGGATTCTGGATTGCTTGCTTTCTGAATCATCTTCCATTATGTGCCTCCAGGAATTTTGGGTTGGAAATGAAGAACTTGTTCACATGTATGAGGAGAGACTTGGGGATGCTGGTTACCATCTCTTCAAGCTTGCTCGAACAAACAACCGGGGAGATGGTCTGCTGACTGCTATTCACAAAGAATATTTCAATGTTGTGAATTATAGAGAGTTGCATTTTAATGATTGTGGTGATCGTGTTGCTCAGTTGTTACATGTTCAGTCAGTTGGTCCCTTTTCACAAAACCAAAAGGGAAATTTCCAACAAGAGTTTCTGATTGTGAATACCCACTTATTGTTTCCTCATGATTCAAGTCTGTCTATAGTGAGATTGCATCAGGTTTACCAAATATTACAATATGTGGAATTGTATCAGAGAGAAAACAGACTCAAACCCATGCCTATTATACTCTGTGGTGACTGGAATGGAAGCAAGCGTGGTCATGTTTACAAGTTCCTTAGATCACAGGGTTTTGTATCATCATATGATATTGCTAATCAATATACTGACAGTTATGCAGATGCCCACAGGTGGGTTAGTCACCGAAATCATAGAGGAAATATCTGTGGTGTTGACTTCATTTGGCTTTGCAATCCTAACCAAGCACGGAAACCCTTGAAGACAAGTTGGGCTGAAGCTGTATTTAGTATACTAAAGTTCCAGTTACGTAAAGCTTCAATGTCTGAAGATGATGCATTTGCCTTTCTGAAGGGTGACAACTGTTCTGATTCTGTGACATATTTTAGTTTCTCTGAAGCTCTCCGTCAGGTGAAGTTAATTGGTGTCCCTTATGGTCTATGCTTTCAACAATTGCAAGATCTATGGAATCAAGCAGATGTTGATGGAAATGGTGTCATCGACTTTGAAGAATTCAAGCATAAGATTTGGAATTCCACATGTCCAGAGCATGTGTTGGAAAATTTCAATGGGTGCATGGAGGATGCTAATACAGAACAACAGGAGCAAGAAGCCATTGGTTTTAAGGTGAAGAATGCAATGCTCTTTCCCCGTGAAGTAGAGAAAGGACTGTGGCCAGAAGATTACTCTCTTTCCGATCATGCTAAGTTGACCGTTGTCTTTTCAGCAGCAAAGATGCCATGTTAA 1410 0.405 MVVATGSKFNLRRGNCSSHNIINDYSSDGELSRINKSGCFSSMAEVDKDPSCVSFTTFNILAPIYKRIDPQNQGLRESEFRSFWLARNERILDCLLSESSSIMCLQEFWVGNEELVHMYEERLGDAGYHLFKLARTNNRGDGLLTAIHKEYFNVVNYRELHFNDCGDRVAQLLHVQSVGPFSQNQKGNFQQEFLIVNTHLLFPHDSSLSIVRLHQVYQILQYVELYQRENRLKPMPIILCGDWNGSKRGHVYKFLRSQGFVSSYDIANQYTDSYADAHRWVSHRNHRGNICGVDFIWLCNPNQARKPLKTSWAEAVFSILKFQLRKASMSEDDAFAFLKGDNCSDSVTYFSFSEALRQVKLIGVPYGLCFQQLQDLWNQADVDGNGVIDFEEFKHKIWNSTCPEHVLENFNGCMEDANTEQQEQEAIGFKVKNAMLFPREVEKGLWPEDYSLSDHAKLTVVFSAAKMPC. 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11547 469 PANTHER CARBON CATABOLITE REPRESSOR PROTEIN 4 37 463 - -
Seca4g11547 469 Gene3D Endonuclease/exonuclease/phosphatase 37 345 IPR036691 -
Seca4g11547 469 FunFam Putative calcium-binding protein 37 466 - -
Seca4g11547 469 SUPERFAMILY DNase I-like 46 270 IPR036691 -
Seca4g11547 469 SUPERFAMILY EF-hand 349 405 IPR011992 -
Seca4g11547 469 ProSitePatterns EF-hand calcium-binding domain. 381 393 IPR018247 -
Seca4g11547 469 Pfam Endonuclease/Exonuclease/phosphatase family 84 312 IPR005135 GO:0003824
Seca4g11547 469 ProSiteProfiles EF-hand calcium-binding domain profile. 368 403 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11547 Seca-Chr4 255150460 255154347 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11547 118 469 EF-hand Containing Proteins AT1G02270 67.131 1.27e-176 497
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11547 - - gmx:100777138 863.988
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g11547 4 255150460 255154347 Seca4g11547 4 255150460 255154347 ECH