Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11472 ATGGCAGGGTTGTTAGGCGTGAAATCTCAACCCGAAATACAGTCGTTTGGCGTTTTCCTCCGAGAACCGCCGCAGAATGAGACCTCCGGCGGCGGAGGTCACCGGAACCCGTCGCTGGCGTCGAGGCGAACCGTTAAGAAAACGCTGATCGTGGACGAGTCCTCACTGGACAACCCGGATCTGGGTCCGTTTCTTCTGAAGATGGCCCGAGACACCATAGCTTCGGGTGAGGACCCGAATAAGGCCTTGGATTATGCTATTCGGGCCTCCAAGTCGTTCGAGCGGTGTTCGGGTCCGGGTCTGGAGCTTGCCACGTGTCTGCACGTTGTTGCGGCCATTTACAGTAGTTTGGGCCGGTTGGAAGAGGCGGTTCAGGTTTTGGAGCGGTCCATTATGCTGCTGGATATTGAAAACGGGTCGGACCATGCCATGGCCAAGTTTTCCGGGTACATGCAGCTTGGGGATACGTATTCTATGAATGGGCAGCTGGATAGATCCATTTCGTGTTATGAATCGGGTTTAAAGATCCAAATGGAGGCTCTGGGCAAGTCCGACCCGAGAGTTGCTGAGACTTGCAGGTACTTAGCTGAAGCCCATGTTCAAGCCATGCAATTTGATGAGGCAGAGAACTTCTGCAAGAAGACCCTTGAAATTCATAGGGAGCATTGCTCACCAGCTTCCCTTACAGAAGCAGCTGATAGGCGTCTCATGGCCCTTATATGTGAGGCAAAGGGAGATTATGAACCAGCACTTGAGCATCTTGTCCTAGCTAGCATGTCAATGATTGCTAATGGGCAAGATAATGAGGTTGCAGCTATTGATGTTAGCATTGGAGATATTTACCTGTCACTATGTCGTTTTGATGAGGCTGTTTTTGCCTATCAGAAAGCACTAACAGTCTTCAAATCCACCAAAGGTGAAAGTCACAGTTCTGTGGCAGTAGTGTACATTCGCCTTGCTGACCTTTACTACAAGACAGGAAAATTAAGAGAGTCAAAATCCTATTGTGAAAATGCCTTAAGAATATACAGTAAACCAGTGCATGGAACAACAGCTGGAGATATTGCTAGTGGATTGACTGAAATCTCTGCCATCTATGAAGCTCTAAATGAGCCTGAGGAGGCACTGAAGCTCTTGCAGAAGGCAGTGAAATTATTGGAGAATATCCCTGGACAATATAGGACAGTGGCAGGAATAGAAGCTCAAATGGGAGTGATGTTCTATATGGTTGGGAGGTATATGGATGCTTGGAAATCTTTTGACAATGCTATCACCAAGCTGAGAGCCAGTGGGGAGAGGAAATCTGCATTTTTTGGAGTTGTATTGAACCAGATGGGCTTGGCATGTGTACAATTGTATAACATAGGGGAGGCTGCTACACATTTTGAAGAAGCAAGAGAGATATTGGAGAGGGAATGTGGAACATATCATTTGGATACTCTTGGGGTATATAGCAATCTTGCAGCAACTTATGATGCCATGGGGAGAGTTGAAGATGCCATTAGGATTTTGGAATACATACTCAAGATGAGGGAAGAAAAACTTGGAACTGCAAATCCAGATGTTGATGATGAAAGGAAAAGACTATTTGAGCTTTTGAAAGAAGCTGGAAGAGTTCGAAATAGAAAGGGAAAATCACTTGAAAACCTTATAGATTCCAACTCCTTAAAGATGAAGAAGGAAGGAAAAAAGAGATGGGGTGCATTTGGTTTGAGAACTTAA 1722 0.4593 MAGLLGVKSQPEIQSFGVFLREPPQNETSGGGGHRNPSLASRRTVKKTLIVDESSLDNPDLGPFLLKMARDTIASGEDPNKALDYAIRASKSFERCSGPGLELATCLHVVAAIYSSLGRLEEAVQVLERSIMLLDIENGSDHAMAKFSGYMQLGDTYSMNGQLDRSISCYESGLKIQMEALGKSDPRVAETCRYLAEAHVQAMQFDEAENFCKKTLEIHREHCSPASLTEAADRRLMALICEAKGDYEPALEHLVLASMSMIANGQDNEVAAIDVSIGDIYLSLCRFDEAVFAYQKALTVFKSTKGESHSSVAVVYIRLADLYYKTGKLRESKSYCENALRIYSKPVHGTTAGDIASGLTEISAIYEALNEPEEALKLLQKAVKLLENIPGQYRTVAGIEAQMGVMFYMVGRYMDAWKSFDNAITKLRASGERKSAFFGVVLNQMGLACVQLYNIGEAATHFEEAREILERECGTYHLDTLGVYSNLAATYDAMGRVEDAIRILEYILKMREEKLGTANPDVDDERKRLFELLKEAGRVRNRKGKSLENLIDSNSLKMKKEGKKRWGAFGLRT. 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11472 573 Coils Coil 117 137 - -
Seca4g11472 573 Gene3D Tetratricopeptide repeat domain 258 439 IPR011990 GO:0005515
Seca4g11472 573 Gene3D Tetratricopeptide repeat domain 150 257 IPR011990 GO:0005515
Seca4g11472 573 ProSiteProfiles TPR repeat profile. 271 304 IPR019734 GO:0005515
Seca4g11472 573 SMART tpr_5 271 304 IPR019734 GO:0005515
Seca4g11472 573 SMART tpr_5 147 180 IPR019734 GO:0005515
Seca4g11472 573 SMART tpr_5 104 137 IPR019734 GO:0005515
Seca4g11472 573 SMART tpr_5 439 472 IPR019734 GO:0005515
Seca4g11472 573 SMART tpr_5 481 514 IPR019734 GO:0005515
Seca4g11472 573 SMART tpr_5 356 389 IPR019734 GO:0005515
Seca4g11472 573 SMART tpr_5 397 430 IPR019734 GO:0005515
Seca4g11472 573 SMART tpr_5 313 346 IPR019734 GO:0005515
Seca4g11472 573 SMART tpr_5 189 222 IPR019734 GO:0005515
Seca4g11472 573 Pfam Tetratricopeptide repeat 441 513 - -
Seca4g11472 573 Pfam Tetratricopeptide repeat 270 344 - -
Seca4g11472 573 SUPERFAMILY TPR-like 104 299 IPR011990 GO:0005515
Seca4g11472 573 Gene3D Tetratricopeptide repeat domain 54 149 IPR011990 GO:0005515
Seca4g11472 573 Gene3D Tetratricopeptide repeat domain 470 551 IPR011990 GO:0005515
Seca4g11472 573 Pfam MalT-like TPR region 108 255 IPR041617 -
Seca4g11472 573 SUPERFAMILY TPR-like 276 511 IPR011990 GO:0005515
Seca4g11472 573 PANTHER PROTEIN KINESIN LIGHT CHAIN-RELATED 3 44 555 - -
Seca4g11472 573 ProSiteProfiles TPR repeat profile. 356 389 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11472 Seca-Chr4 253981050 253986313 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11472 - - cam:101489796 977.237
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g11472 4 253981050 253986313 Seca4g11472 4 253981050 253986313 ECH