Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11444 ATGATCATCGCTGCACTTATCACTGCATCTTCTGTCCTAATTGTGGGATTTTGTTTTGCCGCAATCAACGGCAGACGTAGGAGGAAGGTTGCGGTTGGGTTCTTCCATCCGTACACCAACGACGGCGGCGGCGGAGAACGGGTTCTGTGGTGCGCCGTCAGAGCCATACAAGACGATAACCCTCACCTTCCCTGCCTCGTCTACACCGGAGATCACGATGCCACCCCTCAAACGTTGATGGCTCGAGCCCTTGATCGCTTTGGGGTCACCCTCCTCTCCCCTCCCAAGGTGGTGCATTTGTACAAGAGAAAGTGGATTGAAGAAACCACTTATCCGCACTTTACTATGATTGGTCAAAGTCTTGGTTCTATGTATCTTGCATGGGAAGCGTTGTGCAAGTTTACCCCTTCATATTATTTTGACACAAGTGGATATGCTTTTACTTATCCCCTTGCTCGGTTGTTTGGATGCAAAGTTATTTGCTATACACATTACCCTACTATCAGTTCAGACATGCTATCTCGTGTTCGACAACGCAGCTTGATGTATAATAATGATGCCTTGATTGCAAAAAGTGTTTGGCTTTCTCGGTGCAAAACGGTCTATTATACATTCTTCAGCTGCTTGTATGGGATTGTAGGATCTTGTGCACACCTAGCTATGGTCAATTCATCTTGGACCAAATCCCATATTGAAAAGCTTTGGGGAGTTCCAGATCGTATTAAGCGAGTCTATCCTCCTTGTGATACTTCAGGACTTCAGGTTTGCAATGTGTTCTTTATTGTCTGGTTGTTGTGGATTCTAACAGGTAAGCCATATGAGCAGGTTCTTCCTTTGGAAAGATCAGCGGAAATTCCTGTAATAATATCTGTTGCACAATTTCGACCAGAGAAGGCTCACGGCCTCCAACTTGAGGCCTTTGCAGCTGCCATTAGCAGATTAGATTCTGGCTTGCCAAAACCTAAGCTACAAGTTGTGGGTAGCTGTAGAAATAGATCAGATGAGGAAAGACTCCAGATGTTAAAAAAGAAAGCAATTGAGCTGAATGTGAATGAACAAGTGGAATTTTATAAGAATGTGACATACAGAGATTTGGTGGGACTTTTAGGTGGCGCTGTTGCTGGCATCCATTCCATGACAGATGAGCATTTTGGCATCAGTGTTGTAGAATATATGGCTGCTGGTGCCATCCCAATTGCTCATAATTCCGCTGGCCCAAAAATGGACATTGTGTTAGATGAAGATGGACAACAAACAGGATTCCTTGCATGCACAGTTGAAGAATATGCAGACGCCATGTTGAGAATTATAAGGATGCCTGAGATGGAGAGACTTGAGATGGCTGCTGCTGCAAGGAGACGAGCAAGTAGGTTTTCTGAGCAGAAGTTTTATGATGACTTCAAATCTGCAGTTCGCCCTATTATCTGTCATGTTTCTAGATGA 1443 0.4456 MIIAALITASSVLIVGFCFAAINGRRRRKVAVGFFHPYTNDGGGGERVLWCAVRAIQDDNPHLPCLVYTGDHDATPQTLMARALDRFGVTLLSPPKVVHLYKRKWIEETTYPHFTMIGQSLGSMYLAWEALCKFTPSYYFDTSGYAFTYPLARLFGCKVICYTHYPTISSDMLSRVRQRSLMYNNDALIAKSVWLSRCKTVYYTFFSCLYGIVGSCAHLAMVNSSWTKSHIEKLWGVPDRIKRVYPPCDTSGLQVCNVFFIVWLLWILTGKPYEQVLPLERSAEIPVIISVAQFRPEKAHGLQLEAFAAAISRLDSGLPKPKLQVVGSCRNRSDEERLQMLKKKAIELNVNEQVEFYKNVTYRDLVGLLGGAVAGIHSMTDEHFGISVVEYMAAGAIPIAHNSAGPKMDIVLDEDGQQTGFLACTVEEYADAMLRIIRMPEMERLEMAAAARRRASRFSEQKFYDDFKSAVRPIICHVSR. 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11444 480 FunFam GDP-Man:Man(3)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase 277 458 - -
Seca4g11444 480 CDD GT4_ALG11-like 30 466 IPR038013 GO:0004377
Seca4g11444 480 Gene3D Glycogen Phosphorylase B; 271 458 - -
Seca4g11444 480 Coils Coil 331 351 - -
Seca4g11444 480 Pfam ALG11 mannosyltransferase N-terminus 30 235 IPR031814 -
Seca4g11444 480 Pfam Glycosyl transferases group 1 286 452 IPR001296 GO:0016757
Seca4g11444 480 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 32 470 - -
Seca4g11444 480 PANTHER GDP-MAN:MAN(3)GLCNAC(2)-PP-DOL ALPHA-1,2-MANNOSYLTRANSFERASE 25 476 IPR038013 GO:0004377
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11444 Seca-Chr4 253540633 253546233 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11444 289 463 Glycosyltransferase AT1G78800 30.899 5.94e-11 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11444 K03844 - gmx:100808662 783.482
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g11444 4 253540633 253546233 Seca4g11444 4 253540633 253546233 ECH