Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11431 ATGGCAAGAGTTAAGCATGCACCAGCAGGTCCTCATCGCAGAAACAGAACGAGGAGTGCTGAACAACGAGAACCGCAGTCACAGTCAAAGAAAAGGCGAAATAGGTCAGGAACAGTGGCTCTTCGCGAGATTCGTCGTTTTCAGAAGACTTTCAAGCTTCTTATCCCAGCAGCTCCCTTTATAAGATGTGTCAAAGAGATTACGAACAGATTATCTGCGCAGGTCTCTCGCTGGACACCTGAAGCCGTGGTAGCACTTCAGGAGGCAGCTGAGGATTATCTGGTTAAATTGTTTGAAGATGGAATGCTCTGTGCAATTCATGCAAGGCGTGTAACCCTTATGAGAAAGGATTTTGAGTTGGCCCGGAGGCTTGGAGGAATAGGAAGGCCTTGGTGA 396 0.4798 MARVKHAPAGPHRRNRTRSAEQREPQSQSKKRRNRSGTVALREIRRFQKTFKLLIPAAPFIRCVKEITNRLSAQVSRWTPEAVVALQEAAEDYLVKLFEDGMLCAIHARRVTLMRKDFELARRLGGIGRPW. 132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11431 131 Pfam Core histone H2A/H2B/H3/H4 12 124 IPR007125 GO:0003677
Seca4g11431 131 PANTHER HISTONE H3 10 126 IPR000164 GO:0000786|GO:0003677|GO:0030527
Seca4g11431 131 SMART h35 26 129 IPR000164 GO:0000786|GO:0003677|GO:0030527
Seca4g11431 131 FunFam Histone H3.2 30 128 - -
Seca4g11431 131 SUPERFAMILY Histone-fold 17 127 IPR009072 GO:0046982
Seca4g11431 131 MobiDBLite consensus disorder prediction 14 39 - -
Seca4g11431 131 MobiDBLite consensus disorder prediction 1 39 - -
Seca4g11431 131 Gene3D Histone, subunit A 2 127 IPR009072 GO:0046982
Seca4g11431 131 PRINTS Histone H3 signature 50 67 IPR000164 GO:0000786|GO:0003677|GO:0030527
Seca4g11431 131 PRINTS Histone H3 signature 11 25 IPR000164 GO:0000786|GO:0003677|GO:0030527
Seca4g11431 131 PRINTS Histone H3 signature 91 107 IPR000164 GO:0000786|GO:0003677|GO:0030527
Seca4g11431 131 PRINTS Histone H3 signature 107 128 IPR000164 GO:0000786|GO:0003677|GO:0030527
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11431 Seca-Chr4 253362196 253366432 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11431 K11253 - gmx:100811872 191.815
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g11431 4 253362196 253366432 Seca4g11431 4 253362196 253366432 ECH