Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11414 ATGACTGCAAATGGTGGGGCAGGGACTGAGGAGCACAAGAGGAAAACTAATGATCCTTTTCTCAGGCCTGGGGGGCACCAAAATATGCCAAGGTCACCTAGATTTAGGAAGGACTGGCCAAAGGGTTTGCCAAATGACAATGTGATTGTAAATGGGGATAACAGTTTGAGTAGATATATTACTTCCTTAGCTGGATCTGGACCTCCTAGTACTAGCTTTTGTTCCACCACTGATTCTGAACACTTTATTGAAGATTTGCATGTTAAGAATTATAAGAACCTGGATATAGCTTTAGTTAGCCACCCACATAATTCCAGACAGTCTCAGAGGAATCAATTATCTATTGAGTCTAAGCATAATAGCTTGAGTAGAGAAATTGCACCAAAGGTTGAAGAACATATACCACTCAGATTAAGCAAAGGACTTAAGGGAATTGAATCTGAATTTTGGGGCCTGAAGTCTGTGTCTAGAAAGAATGTAAATCATGATCCACAGAAAGTCTATGCAAATATAAGCAATATAGACAAGACCATCACCCCAAGCAATGCACTTCTTATTAGCAGTATTACAAAGAGTACTTCATCTACATATAATTATCCTCAGTTGATTGTAGAGCAAACAGTAAAGGGAAAGATTTGCAAAGATTTAGACAAAAGCTTCAGTCTTGGTGGAGCACTAATGAGACAGGAGGATGAGAAACCTTCTTCTTCAACTAAGTTTCCATCTGATACACTGCTGAGATCAAATGTTAATGATAATATGCCTTCCTTGCAAGGAAATGTCATGTCTGGCACAGAATCTTCTAAGGATGGACTCAACTTAAGAGGGTGGCTGAAGTCTGAAGGTCATAAAATGAAGAAATCAGAAAGGATACATATATTTAAGCAGATATTAGAATTGGTTGATGTTGTACACTCCCAAGGAGTTGTCTTGCAAGACTTAAGACCATCTTGTTTCACCTTATTGCCTTCAAGTAAAATTAAATACATTGGTTCATCCTGTCAACAAGAGTTAGATAATAAATCCATGACCTGCAATGTGACAAGTAAAAGGCCTTTGGAACAGGATATCTGTGATTGCCAAAGTTTGAGTACAAAGCAGCAAAAGCTCTGTGAGGAGACAAGTTCTCTTAGGCAGCAGCATCACTTCACCTGTATTCATGGCTGCAGGACTATAACAGTGAATCAAACTGATTCTGACATAAACTGGACCATGGGATCAAGGAGTAAAGAAAGTCTGCACCAAGATGGCTCCAGTTGTCAACATACTTCTACAGAAGAAAAACAGGTTATGTCTGCAACCATTCAATTAGAAGAGAAGTGGTATTGTAGTCCAGAAGTGCTCAATGGTGGACTTTGCACATTTTCATCAAATATTTATAACCTTGGTGTTCTTCTTTTTGAGTTACTGTGCAATATTGAGTCATTGGAAGCACACTCAACTGTGATGTTGGATTTACGTCATAGAATCTTACCACCAAAATTTCTATCAGAAAATCCAAAGGAAGCTGGTTTTTGTCTTTGGCTTCTGCATCCTGAACCTTCTGCTCGCCCCAATACCAGGGTGATTTTAGAATCTGAATTTATATGTGAATCAGAGGAATCAAATTCTGGAGAAGATATTGTAGTATCTGAAGAGGATGAGGCTGAAACAGAGCAATTACTACATTTTTTAATTTCTCTTAAAGAAGTAAAGAAAAAAGAGGAAGCCAAATTGGCAGAAGAGCTTAATTGCCTGGATGAAGATATTAAGGAGGTAGAAAGAAGCTATTCATATGGAACATCTTTGGCACAAATGAACTATCCTGAATTGGGAGGAAACAGTTTGCATTTTCATGGTCCTTCCAGTTCAGATAGTAGATCTATTCCAGGGTCATTTGTTGATGATGCAAGATTTATGAGTAATATAAGTGAGCTAGAGAAGTCTTACTTTTCCAGGAGATCCCAAGTCCTGCTCAAAGAGGCTTCAGCTGTTGAAAGCAATGATAAAAATGTGATAGAAAATAGATGGAGATTGACTCATGTAGAGAATGGTAATAAAGAGCCAGGAAGAATTCAGAGTTATGTTGGTTGTCTAGGATCCTTCTTTGAAGATTTATGCAAGTTTGCTAGACACAGCAAGTTTGAAGAACGTGGAACATTAAGGAATAGAGATCTGCTTAGTTCTGCCAATGTAATATGTGCTTTAAGTTTTGACCGTGATGAGGATTACATTGCAGCAGGTGGAGTTTCAAAGAAAATAAAGATTTTTGACCTGAATGCTATTTCCAGTGATTCTATTGACATTCAGTATCCAGTTGTTGAGATGTCAAATAAATCAAAGCTTAGCTGTGTGTGCTGGAACAGTTATATAAAAAATCATCTGGCATCTACTGACTATGATGGTGTGGTTCAGATGTGGGATGCAAGCACTGGTCAGCCATTGTCTCAATACATGGAGCACCAAAAGAGAGCTTGGTCTGTTCACTTTTCTCTGTCTGACCCAAAAATGTTTGCCAGTGGAAGTGATGACTGCTCTGTCAAACTCTGGAATATTAGCGAGGCATGTTTTCTTATATGCACTTTAAGAAATTCTCTAGGAACCATCTGGAACCCTGCCAATGTATGTTGTGTTCAGTTCTCTGCTTATTCAGCACATCTTTTATTTTTTGGATCAGCTGATTACAAGGTGTATGGTTATGATCTTCGTCACACTAGAATCCCTTGGTGCACATTAGCTGGTCATAACAAAGCTGTTAGCTATGTAAAACTTCTTGATGCTGAAACAGTGGTCTCTGCTTCCACTGACAACACTTTGAAGCTCTGGGACCTCAAGAAAACCAGCTCTTCTGGGTTGTCATCTGATGCTTGTGACTTAACCTTTAAAGGTCATATTAATGAAAAGAATTTCGTGGGTTTATCTGTTTTGGATGGATTCATTGCATGTGGCTCAGAATCTAATGAGGTATACTGTTATTACAAGTCTCTGCCAGTGCCAATGGCTTCTCACAAGTTTGAGTCAATTGATCCCATTTCTGGTCATTCAAATAGTGGTGATAATAATGGACAGTTTGTGTCTAGTGTCTGCTGGAGAAAGAAGACTAACATGCTTGTTGCTGCCAACTCAGTTGGAATTGTGAAACTACTGCAGATGGTCTGA 3138 0.3872 MTANGGAGTEEHKRKTNDPFLRPGGHQNMPRSPRFRKDWPKGLPNDNVIVNGDNSLSRYITSLAGSGPPSTSFCSTTDSEHFIEDLHVKNYKNLDIALVSHPHNSRQSQRNQLSIESKHNSLSREIAPKVEEHIPLRLSKGLKGIESEFWGLKSVSRKNVNHDPQKVYANISNIDKTITPSNALLISSITKSTSSTYNYPQLIVEQTVKGKICKDLDKSFSLGGALMRQEDEKPSSSTKFPSDTLLRSNVNDNMPSLQGNVMSGTESSKDGLNLRGWLKSEGHKMKKSERIHIFKQILELVDVVHSQGVVLQDLRPSCFTLLPSSKIKYIGSSCQQELDNKSMTCNVTSKRPLEQDICDCQSLSTKQQKLCEETSSLRQQHHFTCIHGCRTITVNQTDSDINWTMGSRSKESLHQDGSSCQHTSTEEKQVMSATIQLEEKWYCSPEVLNGGLCTFSSNIYNLGVLLFELLCNIESLEAHSTVMLDLRHRILPPKFLSENPKEAGFCLWLLHPEPSARPNTRVILESEFICESEESNSGEDIVVSEEDEAETEQLLHFLISLKEVKKKEEAKLAEELNCLDEDIKEVERSYSYGTSLAQMNYPELGGNSLHFHGPSSSDSRSIPGSFVDDARFMSNISELEKSYFSRRSQVLLKEASAVESNDKNVIENRWRLTHVENGNKEPGRIQSYVGCLGSFFEDLCKFARHSKFEERGTLRNRDLLSSANVICALSFDRDEDYIAAGGVSKKIKIFDLNAISSDSIDIQYPVVEMSNKSKLSCVCWNSYIKNHLASTDYDGVVQMWDASTGQPLSQYMEHQKRAWSVHFSLSDPKMFASGSDDCSVKLWNISEACFLICTLRNSLGTIWNPANVCCVQFSAYSAHLLFFGSADYKVYGYDLRHTRIPWCTLAGHNKAVSYVKLLDAETVVSASTDNTLKLWDLKKTSSSGLSSDACDLTFKGHINEKNFVGLSVLDGFIACGSESNEVYCYYKSLPVPMASHKFESIDPISGHSNSGDNNGQFVSSVCWRKKTNMLVAANSVGIVKLLQMV. 1046
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11414 1045 ProSiteProfiles Protein kinase domain profile. 58 529 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g11414 1045 PANTHER PROTEIN SPA1-RELATED 2 62 1045 IPR044630 GO:0009640
Seca4g11414 1045 ProSitePatterns Trp-Asp (WD) repeats signature. 788 802 IPR019775 -
Seca4g11414 1045 MobiDBLite consensus disorder prediction 227 249 - -
Seca4g11414 1045 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 905 938 - -
Seca4g11414 1045 ProSiteProfiles Trp-Asp (WD) repeats profile. 768 810 IPR001680 GO:0005515
Seca4g11414 1045 Gene3D - 695 1045 IPR015943 GO:0005515
Seca4g11414 1045 SUPERFAMILY Protein kinase-like (PK-like) 271 532 IPR011009 -
Seca4g11414 1045 Coils Coil 1044 1045 - -
Seca4g11414 1045 PRINTS G protein beta WD-40 repeat signature 788 802 IPR020472 -
Seca4g11414 1045 PRINTS G protein beta WD-40 repeat signature 923 937 IPR020472 -
Seca4g11414 1045 PRINTS G protein beta WD-40 repeat signature 831 845 IPR020472 -
Seca4g11414 1045 SMART WD40_4 997 1043 IPR001680 GO:0005515
Seca4g11414 1045 SMART WD40_4 762 801 IPR001680 GO:0005515
Seca4g11414 1045 SMART WD40_4 947 986 IPR001680 GO:0005515
Seca4g11414 1045 SMART WD40_4 716 751 IPR001680 GO:0005515
Seca4g11414 1045 SMART WD40_4 804 844 IPR001680 GO:0005515
Seca4g11414 1045 SMART WD40_4 855 894 IPR001680 GO:0005515
Seca4g11414 1045 SMART WD40_4 898 936 IPR001680 GO:0005515
Seca4g11414 1045 Gene3D Transferase(Phosphotransferase) domain 1 271 539 - -
Seca4g11414 1045 ProSiteProfiles Trp-Asp (WD) repeats profile. 905 945 IPR001680 GO:0005515
Seca4g11414 1045 ProSitePatterns Trp-Asp (WD) repeats signature. 923 937 IPR019775 -
Seca4g11414 1045 MobiDBLite consensus disorder prediction 1 43 - -
Seca4g11414 1045 Coils Coil 562 589 - -
Seca4g11414 1045 Pfam WD domain, G-beta repeat 726 751 IPR001680 GO:0005515
Seca4g11414 1045 Pfam WD domain, G-beta repeat 806 844 IPR001680 GO:0005515
Seca4g11414 1045 SUPERFAMILY WD40 repeat-like 723 1042 IPR036322 GO:0005515
Seca4g11414 1045 SMART serkin_6 202 529 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g11414 1045 ProSiteProfiles Trp-Asp (WD) repeats profile. 811 846 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11414 Seca-Chr4 253097507 253107539 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11414 808 1000 Miscellaneous Gene Families AT5G08390 24.742 9.14e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11414 K16240 - gmx:100799267 1528.07