Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11410 ATGGCAGCTTTCGACCACTTCGGAGACATGTACGATGTTGCACTCAAACCCCGCTTGCTTGCCACCCTCATCAGAGACCACCTTCCTGATGAGAAGCATCCTTTTTCCAATCCCTCTGACCTCTCCAGGGTCGTCTCTTTGATCAAAACACACTCTCTTCTCTCTGAGTCCTTTACAGAATCAATGGACTCCAAGCTAGTTGAAGCCTGGAAATCCGCTGTTACACATTGGGTCCACCGCATTCTCACCCTCCTTTCTAGCACCATGCCAGATAAATGTTGGGCAGGAATAACTTTGCTGGGGGTTACTTGTGAGGAGTGCAGCTCTGATCGTTTCCTAGAATCTTACTCTGAGTGGTTCCAGAAATCACTGTCTTTTCTACAGTCACCGGCTGATTCTCATTTAGTGAGGGTGGCTTCTTGCGCCTCAATATCTGATCTACTTGCAAGGTTAAGTGGATTTCCTAAGTTCAAGAGAGATGGGTCTTCCTGCGCACTGAAAGTCGTTCAGCCTGTTTTGAGGATGTTACAAGATGACAACTCAGAGACAATATGCGGAGCTGCAGTTCATTTGTTATGTACCATAATAACAACATTTCCATTTTCTATTCATCGTCATTATGATAGTGTTGAATCTGTTATTGCTTCAAAACTTTTGTCTGGAGGATGCAGTCTTGATATGTTGAAGAAACTTGCACATTGCCTTGCATTACTCCCAAAATCAAAAGGAGATGAAGAAAGCTGGTCCGTGATGATGCAGAAAATTTTGGTTTTAATAAATGATCAATTAAATTTGGCATTTCAAGGTCTAGAAGAAGAAACCATGCGTAAGGAGGTTATTAGATTGTTGGTTCTGCCAGGAAAACAACCTCTGCCACCTTTAGGAGGCCATGTATCAGGTGAAGAAGCTAGTAACAAAGCAATAAAAAGGTCTGAACAGTCACTAATGTCTAATGTCTCTATACTTATGTTTGGCTGTTGCAAGATGCTTACAAATTCATATCCTGTTAAGGTAAATGTACCTTTTCGCCTGTTATTGGCCCTTGTTGAGAGAATTTTAATGGTAAATGGCTCTTTACCACAAATGTCATTGCCATTCATGACTGCCAAGCAGCAAGAGAATATTTGTTCAGAACTTCCAGTTTTGCACTCATGTAGCCTGGAATTGCTTATGGCAATCATAAAGGCCACAGGCAGTCAATTATTACCACATGCTGCCTCTATTGTGCGTGTCATTACGAAGTACTTCAGGACATGTGCACTGCCAGAATTAAGGATTAAGGTCTATTCAGTCACAAAGACTCTGCTCATATCCATGGGTGTTGGAATGGCTTTATGCCTGGCACAGGAAGTTATCAACAACGCCATTGTTGATTTGAGTACCATTGAGAATAAGAATGGTGGCACATTGAATGGTTTGAATTCAGATGTCTCTACTGGAGCACCTCTACCACCAGGTCAGAGAAAAAGGAAGCATAGCAGCACAGCTGGCTCTCTTCAAGAGTATGACGAAGGTGGTGGTTTAGGAGTTGAAGTTCCCAAGAAGCATCCATTGACTCCAATTTCTCTGAGGATAGCTGCACTTGAGGCATTAGAGGCTGTTATTACGGTGGCTGGTGCTTTAAAATCTGAACAGTGGAGATCAAAAGTTGATAGTCTTTTGATAGTCGTAGCAATGGATTCTTTCAAAGAAAGACCATCTAGCAAAGAAATAAGTGCATTTCAGCAAAAGGAACCTGCTGCAACCGCCACAGATTTGCAGCTTGCTGCATTGCGTGCTCTTTTGGCATCTTTCCTATCGTTTGCTCGGTTGCGGCCCCCATATTTAGGCCGGGGTCTTGAACTTTTTCATAGAGGAAAGCAACAAACTGGAACAAAACTTGCTGAGTTCTGTGCCCATGCTCTGTTAACCTTGGAAGTGCTTATACATCCTAGGGCACTTCCGTTATTAGATTATGGTGCCAATAACAATTCTTTTGGGGAAGCTCAGTTCAATTTCCAAGATGAATATGTTATCCGGAACAACAGCACGCCGTTTGGTTTACCACAGGCAGTGCCTCATGACTATGATGATGATTTATCTACTAGATGGCTGGAAAATGGCAGTGAAGCTGTTGTGTCATTGGCTAAAAAAACTACAGAGCCTTCTGAAGCTTGTAGAGATAATGACCCCAAAGTGCTTTCTGTGAACCTGTCTTCAGACACCAACATCCAAGAGAAGAGTGAGATGCTATCTGAGGCTGCCACCTGTGCAGATGTTGAAATGAGAACCGTCGAGGATGAAACCATTTTCAAGTCAGATCAACCTGGAGAATCTGTGGTGCAATTTCAAGAACCCATCTCTTGCACCACAAGCATCCCTGACACTAACGCTTGTGATGCTGTAGCTACTGAGATAGGGTCTGAGAGGATTGTTACAGAAAGTGCTATGCCTCATATGGAACCAGGCCAAGGAAGCTCGGTTAATAAAAACTTTGAATTAGCTTCCCAGAGTAATAGTTCATTGCAAAGAACATCAGACTCTAATATGATTCAGGAATTTGCATTTAAATTTGATTATGACGATTTAGTGGTTGATGAAGATGGTTTTCCTGAAATTGTGGATGGAGATCCTGATTCTGATTCTGATTCCGAGTAA 2637 0.4251 MAAFDHFGDMYDVALKPRLLATLIRDHLPDEKHPFSNPSDLSRVVSLIKTHSLLSESFTESMDSKLVEAWKSAVTHWVHRILTLLSSTMPDKCWAGITLLGVTCEECSSDRFLESYSEWFQKSLSFLQSPADSHLVRVASCASISDLLARLSGFPKFKRDGSSCALKVVQPVLRMLQDDNSETICGAAVHLLCTIITTFPFSIHRHYDSVESVIASKLLSGGCSLDMLKKLAHCLALLPKSKGDEESWSVMMQKILVLINDQLNLAFQGLEEETMRKEVIRLLVLPGKQPLPPLGGHVSGEEASNKAIKRSEQSLMSNVSILMFGCCKMLTNSYPVKVNVPFRLLLALVERILMVNGSLPQMSLPFMTAKQQENICSELPVLHSCSLELLMAIIKATGSQLLPHAASIVRVITKYFRTCALPELRIKVYSVTKTLLISMGVGMALCLAQEVINNAIVDLSTIENKNGGTLNGLNSDVSTGAPLPPGQRKRKHSSTAGSLQEYDEGGGLGVEVPKKHPLTPISLRIAALEALEAVITVAGALKSEQWRSKVDSLLIVVAMDSFKERPSSKEISAFQQKEPAATATDLQLAALRALLASFLSFARLRPPYLGRGLELFHRGKQQTGTKLAEFCAHALLTLEVLIHPRALPLLDYGANNNSFGEAQFNFQDEYVIRNNSTPFGLPQAVPHDYDDDLSTRWLENGSEAVVSLAKKTTEPSEACRDNDPKVLSVNLSSDTNIQEKSEMLSEAATCADVEMRTVEDETIFKSDQPGESVVQFQEPISCTTSIPDTNACDAVATEIGSERIVTESAMPHMEPGQGSSVNKNFELASQSNSSLQRTSDSNMIQEFAFKFDYDDLVVDEDGFPEIVDGDPDSDSDSE. 879
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11410 878 Gene3D - 50 554 IPR011989 -
Seca4g11410 878 MobiDBLite consensus disorder prediction 471 499 - -
Seca4g11410 878 Pfam rRNA processing/ribosome biogenesis 22 221 IPR012583 -
Seca4g11410 878 PANTHER PROLINE-, GLUTAMIC ACID- AND LEUCINE-RICH PROTEIN 1 7 875 - -
Seca4g11410 878 SUPERFAMILY ARM repeat 68 658 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11410 Seca-Chr4 253015642 253028179 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11410 - - aprc:113850109 1320.84