Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Seca4g11409 | ATGTTTACTTCATTTAACACTTACTGTCTCAGTAACTGCCTCACTCTCCCATCTCGTCTTTTGAATTCAAATCCTCTCATTTATCGATCAATGCCGACCGGTGAACTCCGATACACATCGCCGCCGAAGGCCACGGCGAACTCCTCCGTTGGCTACGAAGAGGACGGCTGGGTGTGGTCTCAGATCAAGGCGGAGGCACGCCGCGACGCCGAGTCAGAACCGGCGTTGGCGAGTTACCTTTATTCCACGATTCTCTCACATTCGTCTCTGGAACGGTCACTGTCGTTTCACCTTGGCAACAAGCTCTGTTCCTCCACTCTCCTCTCCACGCTTCTCTATGATCTTTTTCTCAATGCTTTCTCCTCCGACTCTTCCCTCCGCTCCGCCGCCGTCGCTGACCTCCGTGCCGCCCGTGAGCGTGATCCTGCATGCGTCTCCTACTCTCACTGCCTCCTCAATTACAAGGGATTCCTCGCCTGCCAGGCGCACCGTGTAGCACACCTGCTGTGGCGGCAGTCGCGGCGGCCGTTGGCGCTGGCCCTGCATTCTCGCATTGCTGATGTTTTTGCGGTGGATATTCACCCGGCGGCGAGGATAGGGAAGGGGATTCTGTTTGACCACGCGACGGGGGTGGTGGTAGGAGAGACGGCGGTGATCGGGAACAACGTGTCAATCCTGCACCATGTCACGTTGGGTGGGACTGGAAAAGTTGGTGGGGATCGCCATCCCAAGATTGGGGATGGGGTGCTTATTGGTGCTGGTGCTACCATTCTGGGGAATGTTAAGATTGGGGATGGTGCAAAGATCGGTGCTGGGTCGGTGGTTTTGATTGATGTGCCGCCACGGACCACTGCCGTTGGGAACCCGGCGAGGTTGATTGGTGGCAAGGAGAAGCCATCTAAGCTTGAGGATGTTCCTGGGGAGTCCATGGATCATACTTCCTTCATCTCTGAGTGGTCAGATTATATCATTTGA | 975 | 0.5559 | MFTSFNTYCLSNCLTLPSRLLNSNPLIYRSMPTGELRYTSPPKATANSSVGYEEDGWVWSQIKAEARRDAESEPALASYLYSTILSHSSLERSLSFHLGNKLCSSTLLSTLLYDLFLNAFSSDSSLRSAAVADLRAARERDPACVSYSHCLLNYKGFLACQAHRVAHLLWRQSRRPLALALHSRIADVFAVDIHPAARIGKGILFDHATGVVVGETAVIGNNVSILHHVTLGGTGKVGGDRHPKIGDGVLIGAGATILGNVKIGDGAKIGAGSVVLIDVPPRTTAVGNPARLIGGKEKPSKLEDVPGESMDHTSFISEWSDYII. | 325 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Seca4g11409 | 324 | Pfam | Hexapeptide repeat of succinyl-transferase | 209 | 225 | IPR001451 | - | |
| Seca4g11409 | 324 | ProSitePatterns | Hexapeptide-repeat containing-transferases signature. | 251 | 279 | IPR018357 | GO:0016740 | |
| Seca4g11409 | 324 | Gene3D | Hexapeptide repeat proteins | 192 | 311 | - | - | |
| Seca4g11409 | 324 | Gene3D | serine acetyltransferase, domain 1 | 42 | 191 | IPR042122 | - | |
| Seca4g11409 | 324 | FunFam | Serine acetyltransferase | 192 | 317 | - | - | |
| Seca4g11409 | 324 | SMART | SATase_N_2_a | 58 | 162 | IPR010493 | GO:0005737|GO:0006535|GO:0009001 | |
| Seca4g11409 | 324 | NCBIfam | serine O-acetyltransferase | 132 | 291 | IPR005881 | GO:0005737|GO:0006535|GO:0009001 | |
| Seca4g11409 | 324 | FunFam | Serine acetyltransferase 5 | 43 | 191 | - | - | |
| Seca4g11409 | 324 | PANTHER | SERINE ACETYLTRANSFERASE | 31 | 324 | - | - | |
| Seca4g11409 | 324 | Pfam | Bacterial transferase hexapeptide (six repeats) | 242 | 275 | IPR001451 | - | |
| Seca4g11409 | 324 | Pfam | Serine acetyltransferase, N-terminal | 58 | 162 | IPR010493 | GO:0005737|GO:0006535|GO:0009001 | |
| Seca4g11409 | 324 | CDD | LbH_SAT | 189 | 289 | IPR045304 | - | |
| Seca4g11409 | 324 | SUPERFAMILY | Trimeric LpxA-like enzymes | 55 | 294 | IPR011004 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Seca4g11409 | Seca-Chr4 | 253009056 | 253010814 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Seca4g11409 | 58 | 314 | Miscellaneous Gene Families | AT2G17640 | 56.031 | 3.22e-91 | 273 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Seca4g11409 | K00640 | - | gmx:547632 | 530.02 |