LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca4g11287	ATGGAGCATTTAGATGATGGAAATCAATCATCATTAAATAATGTTGATGAAGTAGAAGTCACTAATTCTCCACTCATTTGTGGCCTTCCAGATGATATTTCTCTTTTGTGTCTGGCAAGAGTTCCTAGAAAATATCATTCAGTCCTGAAGTGTGTCTCAAAAAGATGGAGGGACTTAGTTTGCAGCGAAGAGTGGCTTTATCACCGCAGAAAGCATAAACTTGATGAGACCTGGATCTATGCTTTGTGCACAGACAAATTAGATCAGATTTGCTGTTATGTTTTGGATCCAACCTCCTCAAGAAAATGTTGGAAGCCCATAAATGGGCTTCCACCTCGCATCATGAAAAGAAAAGGCATGGGTTTTGAAGCCTTGGGAAATGAGCTATTCTTAATGGGTGGCTGTAGCTGGTCTGAAGATGCTACTGAGGAGGTTTATTCATACAATGCTTCCTTGAACTCTTGGGTTGAAGCTGCTTCCTTGTCAACTGCTAGAGGTGCTACTTTGCTTGTGAAGTTTTGGATGAAAAACTATATGCTATTGGTGGCATAG	552	0.4058	MEHLDDGNQSSLNNVDEVEVTNSPLICGLPDDISLLCLARVPRKYHSVLKCVSKRWRDLVCSEEWLYHRRKHKLDETWIYALCTDKLDQICCYVLDPTSSRKCWKPINGLPPRIMKRKGMGFEALGNELFLMGGCSWSEDATEEVYSYNASLNSWVEAASLSTARGATLLVKFWMKNYMLLVA.	184

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca4g11287	183	SUPERFAMILY	F-box domain	23	70	IPR036047	GO:0005515
	Seca4g11287	183	Pfam	F-box domain	27	62	IPR001810	GO:0005515
	Seca4g11287	183	SUPERFAMILY	Kelch motif	89	172	IPR015915	GO:0005515
	Seca4g11287	183	PANTHER	OS02G0202900 PROTEIN	10	166	IPR045887	-
	Seca4g11287	183	CDD	F-box_AtAFR-like	25	70	-	-
	Seca4g11287	183	Pfam	Kelch motif	117	162	IPR006652	GO:0005515
	Seca4g11287	183	Gene3D	-	67	183	IPR015915	GO:0005515
	Seca4g11287	183	SMART	fbox_2	29	69	IPR001810	GO:0005515

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca4g11287	Seca-Chr4	251387046	251390609	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca4g11287	29	165	Miscellaneous Gene Families	AT4G33900	31.818	5.26e-11	58.5

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca4g11287	-		-	gmx:100798211	269.24

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Seca4g11287	4	251387046	251390609	Seca4g11287	4	251387046	251390609	ECH