Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11242 ATGGGAGAAGAAGCAAAAAGGTATGCGGTAGTGACAGGAGCTAATAAAGGGATTGGCTATGGGATAAGCAAGAAATTGGCTTCAAGTGGTATAGTGGTGGTGCTTACAGCTAGAAATGAGAAAAGGGGTTTGGAAGCAGTGGAAAAATTGAAAGAGTTAGGCCTCTTTGTGGTTTATCATCAACTTGATGTAACTGACCCTGCCAGTGTTGCTTCTTTAGCAGATTTCATCAAAACCCAATTTGGAAAACTTGATATCTTGGTGAACAACGCAGGTGTTCCTGGAGGAATAGTAAATGGAGAGAATGTCCTTAGAAGGAAAAGGGGTGAAATATCAGATTGGAATATAATAGTGCATCAAAATTATGAATTAGCCAAAGAATGTGTTGAAACGAACTTCTTTGGTACAGAAAGAGTGACAGAAGCTCTTCTTCCCCTGCTCCAACTATCCCCTTCACCCAGGATTGTCAATATCTCCTCTAAAATAGGACTACTGAAGAATATACCAAATGACTGGGCAAGAGGAGTGTTTAGTGACATTGAAAACCTTACAAATGAAAAACTTGGTGAGGTGCTCAGTGAGTTTCTGAAAGATTACAAAGAAGGATCATTGGAAACCAAAAACTGGCCACCTGTAGTTTCTGGCTACACCATGTCAAAAACAGCCTTAAATGCCTACACAAGGATGCTGGCTAACAAGTACCCTCATTTTCGCATAAATTCTATATGCCCTGATTTTGTCAAGACTGATATAAACCAGAATACAGGCTTTTTAAGCATTGATGAAGGTGCTGAGAGTCCTGTTAAGCTAGCATTGTTGCCAGATATTGTTACAGGAGCAAATAAGGGGATAGGATTTGCAATATGCAAGCAATTGGCTTCTAATGGGATCACTGTGGTTCTAACAGCAAGAGATGAGAAAAGGGGTCTTGAAGCTGTTGACAAACTGAAACAACTTGGTCTTCCTGGCCATGTGGTTTTTCATCAACTTGATGTCACAGATCCTGCAAGTATAAGATCATTGGCAGATTTCATCAAGACACAATTTGGAAAACTTGATATATTGGTAAACAATGCTGGAATTCCTGGAGCACAGGTGGATAGTGAGGCTTTGGCTGCTGCAGGTGTTCTGGAAAATGCTGGCAAAGTTGATTGGAGTAAAATACTAATTGAAAACTACGAATTAACTGAAGCAGGTCTTAAAACAAACTACTATGGAGCTAAGGAACTTACAAAAGCACTTATTCCCCTTCTCCAATTTTCAGGCTCGCCAAAAATTGTCAATGTTTCCTCATCCATGGGAAGGCTAGAGAATATGCCAAATGGAGAACCTAAAGAAGTACTAAGTGATGTTCAAAACCTCACAGAAGAAAAGATTGATGACATTTTGAATGAATTTCTAAAGGATTTTAAAGAGGGTTCACTAGAAACCAAAGGCTGGCCTCTTAATATGTCTGCATATACTGTCTCAAAAGTTGCTCTAAATGCCTACACAAGGGTTCTGGCTAGGAAGTACCCTTCATTCTGCATCAATGCTGTTTGCCCTGGCTTTGTGAAAACGGATATAAATTTCAATAATGGCATTCTAACACCTGATGAAGGTGCTGAAGCTGTTGTGAGGCTGGCTCTGCTACCTGATGATAGTCCTTCTGGCCTCTTTTTCCTTAGAAGTGAAGAGAAACCATTTTGA 1689 0.3996 MGEEAKRYAVVTGANKGIGYGISKKLASSGIVVVLTARNEKRGLEAVEKLKELGLFVVYHQLDVTDPASVASLADFIKTQFGKLDILVNNAGVPGGIVNGENVLRRKRGEISDWNIIVHQNYELAKECVETNFFGTERVTEALLPLLQLSPSPRIVNISSKIGLLKNIPNDWARGVFSDIENLTNEKLGEVLSEFLKDYKEGSLETKNWPPVVSGYTMSKTALNAYTRMLANKYPHFRINSICPDFVKTDINQNTGFLSIDEGAESPVKLALLPDIVTGANKGIGFAICKQLASNGITVVLTARDEKRGLEAVDKLKQLGLPGHVVFHQLDVTDPASIRSLADFIKTQFGKLDILVNNAGIPGAQVDSEALAAAGVLENAGKVDWSKILIENYELTEAGLKTNYYGAKELTKALIPLLQFSGSPKIVNVSSSMGRLENMPNGEPKEVLSDVQNLTEEKIDDILNEFLKDFKEGSLETKGWPLNMSAYTVSKVALNAYTRVLARKYPSFCINAVCPGFVKTDINFNNGILTPDEGAEAVVRLALLPDDSPSGLFFLRSEEKPF. 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11242 562 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 424 432 IPR002347 -
Seca4g11242 562 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 487 506 IPR002347 -
Seca4g11242 562 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 350 361 IPR002347 -
Seca4g11242 562 Gene3D - 3 275 - -
Seca4g11242 562 Gene3D - 276 562 - -
Seca4g11242 562 PRINTS Glucose/ribitol dehydrogenase family signature 506 523 IPR002347 -
Seca4g11242 562 PRINTS Glucose/ribitol dehydrogenase family signature 487 506 IPR002347 -
Seca4g11242 562 PRINTS Glucose/ribitol dehydrogenase family signature 274 291 IPR002347 -
Seca4g11242 562 PRINTS Glucose/ribitol dehydrogenase family signature 350 361 IPR002347 -
Seca4g11242 562 PRINTS Glucose/ribitol dehydrogenase family signature 418 434 IPR002347 -
Seca4g11242 562 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 474 502 IPR020904 GO:0016491
Seca4g11242 562 CDD carb_red_PTCR-like_SDR_c 269 562 IPR045313 GO:0016616
Seca4g11242 562 FunFam (+)-neomenthol dehydrogenase 276 562 - -
Seca4g11242 562 PANTHER (+)-NEOMENTHOL DEHYDROGENASE 276 560 - -
Seca4g11242 562 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 203 231 IPR020904 GO:0016491
Seca4g11242 562 Pfam short chain dehydrogenase 276 436 IPR002347 -
Seca4g11242 562 Pfam short chain dehydrogenase 8 166 IPR002347 -
Seca4g11242 562 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 7 275 IPR036291 -
Seca4g11242 562 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 276 548 IPR036291 -
Seca4g11242 562 FunFam (+)-neomenthol dehydrogenase 2 275 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11242 Seca-Chr4 250965112 250972379 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11242 230 527 Acyl Lipid Metabolism Gene Families AT1G24360 22.258 1.27e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11242 K15095 - cave:132186563 706.057
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g11242 4 250965112 250972379 Seca4g11242 4 250965112 250972379 ECH