Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11240 ATGTTAGGAACAACTTCACAATCCTTTCTTCTTCTCCTTGTCCTCTTTTCAATCACTACTCATTTAGCATCACATTCCAATGCTTACCCTCTTTCAACCTACAATAGATGGATCATAGATGAATCCACAGGGCAACGTGCCAAACTTGTATGTGGCAATTGGGCTGGTCACCTTAAACCAATGCTCCCTGAGGGTCTTGATAGAAGACCCTTAAAGGAGCTTGTTGCTGAACTTGTCAAACACAAGTTCAATTGTGTTCGCCTCACATATGCAATTTACATGTGGACACGCAATGGCCATCAAATTGTGAATGATACCTTTAATGCTTTGGATGCACCAGAGGTGGTGGATGGCATTGCCAAGTACAATCCTTCTGTTTTGAAAATGACTCATATTCAAGCCTTTGAAGCTGTGGTGAATGAACTTGGGGCACAAAATGTGAAGGTGTTGCTTGATAATCATGTCAGTGAACCAAAGTGGTGCTGTAATGATGATGATGAGAATGGATTCTTTCATGATAGACACTTTGATCCTCAGGAATGGGAAAAGGGCCTTACTTTGGCAGCCAAACACTTTGCTGGAAATCATGCTGTTGTGGCAATGAGTTTGAGGAATGAATTACATGGTCCACGCCAAAACCTGAAGGATTGGTACAAGTACATGAGCCAGGCAGCACTAGCTATCCATAAGGCAAACCCAAATGTGCTTGTGCTTATCTCAGGTTTGAACTATGACACAGAGTTTCAGTTTTTAAGGAATAAACCATTGAAGATAGACTTGGGTAAAAAGCTTGTGTATGAGACACATTTGTACTCATGGTCTGGAATTGGGACACTCAAATTGAAAGAGATTTGGACTAAACAACCATTAAACAGGATATGTGCTGAGAGCATTAGGGGGATAGACTTCAGAGCTGGGTTCCTTACCACTGGTATAAATGCAGCTCCTTTAATCTTTACTGAGTTTGGATTTGATCAGAGAGGTTCTTCTGTGGAAGACAACAGGTTCTTGACATGCCTTCAAACCTATCTTGTTGGAAGAGACTTGGATTGGGGTTTGTGGGCTTTTCAAGGTGACTATTATTTGAGGGAAGACAAAATTCAAGTTGAGGAGACATTTGGTGTAATGGATGCCACTTGGCATAATCTCAGATACCCAAATTTCACTGACAAGTTTCAACTTTTGCAAAGGAAGAATCAAGATCCTACTTCCAATGCCCCCAAAGCATATATAATGTACCATCCATTAACTGGTCAATGTGTCCAAGTGAATGACAAGAATGAACTAGAAGTTGGTAGCTGTGAGAACCAAAACAGATGGATTTATGGTGGAGATGGGACTCAAATCCTTTTAAATGGCACTAAGAAGTGCTTAACTGCCTCAGGTGAAGGGCTTCAAGCTGCTGTTGCTGATAATTGCCAAAGCAAGAAAAGTTCTTGGAAATCTGTTTCACTTTCTAAACTTCATTTGGCTACTGTGGATCAAGATGGGAAACAACTTTGCTTGCAGAAAGATTCTAGCTCATCCAACATTGTGACTTCAAAATGTATTTGCATAGATGATGATTCTCTCTGTCTGGATGATCCCCAAAGCCAGTGGTTCCAGCTTGTTGCCACCAATGTATAG 1626 0.4102 MLGTTSQSFLLLLVLFSITTHLASHSNAYPLSTYNRWIIDESTGQRAKLVCGNWAGHLKPMLPEGLDRRPLKELVAELVKHKFNCVRLTYAIYMWTRNGHQIVNDTFNALDAPEVVDGIAKYNPSVLKMTHIQAFEAVVNELGAQNVKVLLDNHVSEPKWCCNDDDENGFFHDRHFDPQEWEKGLTLAAKHFAGNHAVVAMSLRNELHGPRQNLKDWYKYMSQAALAIHKANPNVLVLISGLNYDTEFQFLRNKPLKIDLGKKLVYETHLYSWSGIGTLKLKEIWTKQPLNRICAESIRGIDFRAGFLTTGINAAPLIFTEFGFDQRGSSVEDNRFLTCLQTYLVGRDLDWGLWAFQGDYYLREDKIQVEETFGVMDATWHNLRYPNFTDKFQLLQRKNQDPTSNAPKAYIMYHPLTGQCVQVNDKNELEVGSCENQNRWIYGGDGTQILLNGTKKCLTASGEGLQAAVADNCQSKKSSWKSVSLSKLHLATVDQDGKQLCLQKDSSSSNIVTSKCICIDDDSLCLDDPQSQWFQLVATNV. 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11240 541 SUPERFAMILY (Trans)glycosidases 29 385 IPR017853 -
Seca4g11240 541 PANTHER CELLULASE FAMILY PROTEIN (AFU_ORTHOLOGUE AFUA_5G14560) 16 540 - -
Seca4g11240 541 Gene3D Glycosidases 28 398 - -
Seca4g11240 541 SUPERFAMILY Ricin B-like lectins 406 516 IPR035992 -
Seca4g11240 541 Pfam Cellulase (glycosyl hydrolase family 5) 70 356 IPR001547 GO:0004553|GO:0071704
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11240 Seca-Chr4 250952474 250954307 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11240 11 539 Glycoside Hydrolase AT3G26130 39.405 1.14e-134 400
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11240 K01179 - adu:110276660 584.719