Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11221 ATGGCTACTTCTTCTGCTTCATTCGCTCGCTTCTCTATCATATCCAAACCTTCTATCCAACCGCAATTTATCCTCTTCAACTTCCCTTCTCGAACCGAAACCCTCCATTCTCGAACCGGGGCGTCCCGGTTCAAGTGTTCGGCCGGTCAAACCGGGTTCTTCACGAAACTGGGGCGGTTGATAAAGGAGAAGGCGAAGAGCGATGTGGAGAAGTTGTTCTCGGGTTTCTCCAAGACCCGAAACAACCTCGCCGTCATCGACGAGCTCCTCCTCTACTGGAACCTCTCCGACACTGACCAAGTCCTCGACCAACTCGAAGAGGCTCTTTTAGTGTCTGATTTTGGACCAAAAATCACTATAAAGATAGTGGAGAATTTGCGCGAGGACATATTGTCAGGGAAGCTTAAATCGGGGAATGAGATTAAGGAAGCACTGAAGAGGAATGTTTTGGAATTGTTAACCTCAAAGGGGAGTAAAACTGAACTTCAACTGGGATTCAGGAAGCCAGCTGTAATCATGATAGTTGGTGTTAATGGTGGTGGGAAGACAACATCTTTGGGAAAGCTGGCTTATAGATTGAAGAATGAAGGGGCAAAGGATACAATATTCTATGCTGGTTTTCTGTTCTCATCTTCAAAAATCTACCAGATATTGATGGCAGCTGGTGATACATTCAGAGCAGCTGCTAGTGATCAGCTGGAAATATGGGCAGAAAGGACTGGGTGTGAGATTGTCGTGGCTGAATCTGAGAAAGCCAAAGCATCGTCAGTGCTTTCACAGGCTGTAAAAAAGGGAAAAGAGCTAGGTTTTGATATTGTATTATGTGATACATCTGGACGTTTGCACACTAATTACAGCCTAATGGAAGAGTTGATATCTTGTAAAAAGGCTGTTGCTAAAGTAGTTTCTGGTGCACCAAACGAGATCCTACTGGTTCTGGATGGAACTACTGGTTTGAATATGTTGCCACAAGCGAGAGAATTCAATGATGTTGTGGGTGTTACTGGTTTAGTTTTGACCAAACTGGATGGTTCTGCTAGAGGTGGCTGTGTGGTCAGTGTGGTTGATGAGCTTGGAATCCCTGTAAAATTTGTGGGTGTTGGTGAAGGTGTTGAAGACCTTCAACCCTTTGATGCAGAGGCCTTTGTGGATGCCATTTTTATGTAA 1167 0.4482 MATSSASFARFSIISKPSIQPQFILFNFPSRTETLHSRTGASRFKCSAGQTGFFTKLGRLIKEKAKSDVEKLFSGFSKTRNNLAVIDELLLYWNLSDTDQVLDQLEEALLVSDFGPKITIKIVENLREDILSGKLKSGNEIKEALKRNVLELLTSKGSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAYRLKNEGAKDTIFYAGFLFSSSKIYQILMAAGDTFRAAASDQLEIWAERTGCEIVVAESEKAKASSVLSQAVKKGKELGFDIVLCDTSGRLHTNYSLMEELISCKKAVAKVVSGAPNEILLVLDGTTGLNMLPQAREFNDVVGVTGLVLTKLDGSARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVDAIFM. 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11221 388 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 166 386 IPR027417 -
Seca4g11221 388 CDD FtsY 170 386 - -
Seca4g11221 388 Pfam SRP54-type protein, GTPase domain 212 387 IPR000897 GO:0005525|GO:0006614
Seca4g11221 388 Pfam SRP54-type protein, GTPase domain 169 201 IPR000897 GO:0005525|GO:0006614
Seca4g11221 388 SMART SRP54_N_2 72 153 IPR013822 GO:0005525|GO:0006614
Seca4g11221 388 NCBIfam signal recognition particle-docking protein FtsY 97 387 IPR004390 GO:0006614
Seca4g11221 388 PANTHER SIGNAL RECOGNITION PARTICLE RECEPTOR SUBUNIT ALPHA 42 387 - -
Seca4g11221 388 Pfam SRP54-type protein, helical bundle domain 97 147 IPR013822 GO:0005525|GO:0006614
Seca4g11221 388 Gene3D - 59 160 IPR042101 -
Seca4g11221 388 FunFam Signal recognition particle receptor FtsY 162 388 - -
Seca4g11221 388 FunFam Cell division FtsY, chloroplastic-like protein 59 160 - -
Seca4g11221 388 Gene3D - 161 388 IPR027417 -
Seca4g11221 388 SUPERFAMILY Domain of the SRP/SRP receptor G-proteins 69 146 IPR036225 -
Seca4g11221 388 SMART SRP54_3 169 388 IPR000897 GO:0005525|GO:0006614
Seca4g11221 388 ProSitePatterns SRP54-type proteins GTP-binding domain signature. 361 374 IPR000897 GO:0005525|GO:0006614
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11221 Seca-Chr4 250778227 250784619 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11221 K03110 - gmx:100791073 652.514
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g11221 4 250778227 250784619 Seca4g11221 4 250778227 250784619 ECH