Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11210 ATGGGTTTAGGTTCACGCACGCTGGAGATAACGGTTATATCAGGGGAAAACATTAACGTGACAGAGGACGCATACGTCGTCGTTCGGGGTGAGTCTCTCAAGTGCTGCACAACGAAGATCGCCAGCAGCAATAACTCGAGTTTCCTTTCATGGAACGAGAAGTTCTTTCTTGAGATGCCGGCGTATGCAAGGTCCATAACGTTCGAGGTGCAATGCAACAAGTTCAAGGCTGCTCGACCTGTTGGAGTCGCCAGAATCGCCCTTTCTGATTTTCTCGGCGGTGCCGTACCGGAAAATTGCTTGCAGATGCTGAGTTATAGGTTGAGGGACTGGGAAGGGAGGCGAAACGGTGTTATTCATTTCGCTGTCAGGGTGGCGCTGCCGGAGGAATGCGAGATTTCCGCGGTGGGACCGGTGGAGGGAACGCCGGTGAGTGTGAAGGATTATGGTGAACGGTTAACCGGAAGCTGTGGCAGCGAAGAACGCTCTAATGGAGTTGTTATCGGTATTCCGTTTTGGTGGAATTACCCTAACATCATATAA 543 0.512 MGLGSRTLEITVISGENINVTEDAYVVVRGESLKCCTTKIASSNNSSFLSWNEKFFLEMPAYARSITFEVQCNKFKAARPVGVARIALSDFLGGAVPENCLQMLSYRLRDWEGRRNGVIHFAVRVALPEECEISAVGPVEGTPVSVKDYGERLTGSCGSEERSNGVVIGIPFWWNYPNII. 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11210 180 SMART C2_3c 7 100 IPR000008 -
Seca4g11210 180 Gene3D C2 domain 5 125 IPR035892 -
Seca4g11210 180 CDD C2_SRC2_like 7 121 IPR044750 GO:0006952
Seca4g11210 180 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 7 130 IPR035892 -
Seca4g11210 180 PANTHER INGRESSION PROTEIN FIC1 6 131 - -
Seca4g11210 180 ProSiteProfiles C2 domain profile. 1 101 IPR000008 -
Seca4g11210 180 Pfam C2 domain 7 98 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11210 Seca-Chr4 250691185 250691727 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11210 - - gmx:100810797 230.72