Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11184 ATGATGGCTGATGGTTTTGATGTTTTGAGCATTCTGAACAGTTTCTGGAGTCGCTTCTCTTTCCGTCTCTACGGTTTTGGGGTTCAGGACACATTATTAAACATGCAGCTTACAATTGAGTTTGGAGGGGGCTTGGAGCTTCTTTGTGACTCTAAGAAGATTCATAATGTCAATATTGAACAACAAAATGGAGAAGACAAGTTAACCATGAAAGGTTTGCTTTCTTGGGTGCGGACCAACTTGATTAAGGAGAGGCCTGAAATGTTCATGAAAGGAGATACTGTGAGACCTGGAGTTCTTGTTCTTGTGAATGATTGTGATTGGGAGCTAAGTGGTCAGCTGAATACATCACTGGAAGAGAAAGATGTGGTTGTTTTTATATCAACCTTGCATGGTGGATAG 402 0.4104 MMADGFDVLSILNSFWSRFSFRLYGFGVQDTLLNMQLTIEFGGGLELLCDSKKIHNVNIEQQNGEDKLTMKGLLSWVRTNLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLNTSLEEKDVVVFISTLHGG. 134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11184 133 Hamap Ubiquitin-related modifier 1 [URM1]. 35 133 IPR015221 GO:0005737|GO:0034227
Seca4g11184 133 Pfam Urm1 (Ubiquitin related modifier) 37 133 IPR015221 GO:0005737|GO:0034227
Seca4g11184 133 Gene3D - 33 133 IPR012675 -
Seca4g11184 133 CDD Ubl_Urm1 37 133 IPR015221 GO:0005737|GO:0034227
Seca4g11184 133 SUPERFAMILY MoaD/ThiS 34 133 IPR016155 -
Seca4g11184 133 PANTHER RURM1 PROTEIN 35 133 IPR015221 GO:0005737|GO:0034227
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11184 Seca-Chr4 250333955 250336484 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11184 K12161 - gmx:100306072 193.356
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g11184 4 250333955 250336484 Seca4g11184 4 250333955 250336484 ECH