Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11172 ATGAATCCTGATCCCAGTGGTCGTGTACAATATCATGACTTTCTGAGGGTTTTAAGACTCAAGGCTTGCCCTTTATCAGAAAAGATATTTGCATTCATTGATGTGGAGAAGAGTGGGAGGATTACATTTAGACAGTTCTTGTTTGGATCTGCACTTGTCATGAAGCAGCCAGGGTTCCATCAAGCCTGTGAAGTAGCCTTTGCTGAGTGTGGTGGTGCAGTAAAGGCCTACATTGTTGAAAAAGAATTACAAGATTTCATCCAGTCTGCTATCCCCAGCTGGAGTGAGGATGAGGTCCATGAGCTTTTTATGTTGTTTGATAACGATAAGGACGGAAGAGTTGACAAAGATGACTTTCTCTCATGTCTTAGAAAAAATCCTCTTCTCATAGCTTTTTTTACACCTCAACCGCAGCACAAGGAATTTGGTAGTAATGGAGTGCTAGAGATAGTGTGA 456 0.4167 MNPDPSGRVQYHDFLRVLRLKACPLSEKIFAFIDVEKSGRITFRQFLFGSALVMKQPGFHQACEVAFAECGGAVKAYIVEKELQDFIQSAIPSWSEDEVHELFMLFDNDKDGRVDKDDFLSCLRKNPLLIAFFTPQPQHKEFGSNGVLEIV. 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11172 151 Gene3D - 1 129 - -
Seca4g11172 151 Pfam EF-hand domain 99 125 IPR002048 GO:0005509
Seca4g11172 151 CDD EFh 77 120 IPR002048 GO:0005509
Seca4g11172 151 SMART efh_1 98 126 IPR002048 GO:0005509
Seca4g11172 151 SMART efh_1 25 53 IPR002048 GO:0005509
Seca4g11172 151 SUPERFAMILY EF-hand 2 134 IPR011992 -
Seca4g11172 151 ProSitePatterns EF-hand calcium-binding domain. 107 119 IPR018247 -
Seca4g11172 151 ProSiteProfiles EF-hand calcium-binding domain profile. 94 129 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11172 Seca-Chr4 250227386 250229582 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11172 18 125 EF-hand Containing Proteins AT4G04740 23.967 2.61e-06 44.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11172 K13510 - gmx:100818109 249.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g11172 4 250227386 250229582 Seca4g11172 4 250227386 250229582 ECH