Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11163 ATGGGTTCCGAAGCGGAGGACACGGAAAACGAGAAGCCAACGCAAATGGATCAATCCAATAACAAACTTCATCCTAATACTCTTTCACCCGAAAATCGCGCCAACGGTTATGAAGCCGTTACTAACAACCAAATTAGTTACGATGGTGGCGGTGATAGCCACGGCGATGGCAAAGCAGGGCTCCTTCACCCTCATTCACTTCTCCCCATGCCGGTACCACCGGAGAGTTTGAAAGCCAACGAAAACGACGACGCTCCGTCAAGCCTCTCCGTCGCCGGCAGCATGCCGACCATCGGGAGCTACATCCGGCAGCGGAGCAATCACCTGTCGGAGGCGATTGCCAAGCGAGTCTCGTCGTTCCGGCAATCCATGGAGGAGGAGAACAACGAGGAGTCGTTGGCGAAGGAAGTCACGGAGTTCAACCTCTCCGGTGTCAAGGTCGTGGTGAAGCAGAAACCGGAGGAGGAACAAGCGATGAAAGGGCGAATCAGCTTCTTCTCGAGGTCCGGTTGCAGGGACTGCACGGCGGTGCGGAGGTTCTTCAGGGTGAAAGGGCTCAAGTTCGTGGAGATTAACATCGACGTCTTCACCGAGAGAGAGAGTGAGCTACGAGAGAGGACGGGGAGCACTTCGGTGCCGCAGATTTTCTTCAACGAGAAGCTGATCGGAGGGTTGGTGGCGCTGAACTCGCTGCGGAACAGCGGCGAGTTCGAGCGGAGGGTGGCGGAGCTGGTGGCCGAGAAACCCCCCGGCGATGATGCGCCTGCGCCGCCGGTGTATGGGTTTGATTATCTCGATGAGAATCGGACGGACGAGATGGTTGGGGTAGTTAGTGTTCTGCGGCAGAGATTGCCCATTCAGGATCGATTGAAGAGGATGAAAATTGTTAAAAACTGTTTCGAGGGAAACGAGTTGGTAGAGGTTCTGGTTCAGCACCTCGATTGCACGCGTAACAAGGCTGTTGAGATCGGAAAACAGTTATCCAGGAAGCACTTCATCCATCATGTTTTCGGGGAAAATGATTTTGAGGAGGGAAATCACCTGTATCGTTTCCTTGAGCATGAACCTTTTATTCCCAGATGCTTTAATTTCCGTGGTGCCACAAATGATAATGAACCAAAGACTACAGCTACAATTTGCGAAAGGCTTACTAAGATTATGTCTGCCATCCTTGAGTCTTATGCTTCTGATGATAGGCAACATGTTGATTATGAGGCCATTAGCAAAAGCGAAGAATTTCGTAGGTATGTAAATATGACCCTGGATCTGCAGCGATTGAATCTCTTGGAACTATCAGAAAATGAGAAGCTTGCTTTCTTCTTAAATTTGTACAATGCCATGGTCATCCATGCTGTCATTAGCGTAGGGTGTCCAGAAGGTGTGATTGATAGGAGATCCTTCTTCAATGATTTCCAGTATTTGGTTGGAGGGCATCCTTATTCCCTTACTATTATTAAAAATGGCATCCTCAGATGCAATCGGAGGCCACCATATTCCTTAGTGAAGCCCTTTAGCACAGGAGACAAGCGGTTAGAGGTTGCTCTTGTCAAGTTAAATCAGCTATTTCACTTTGGACTTTGTAATGGTACAAAATCCAGCCCAAAGGTGAGGTTCTTCTCTCCCCATAGAGTTGTAGATGAATTAAGAGGTGCTGCAAGAGAGTTCTTTGAGACTGATGGAATCGAAGTGGACCTGGAGAAGAGAACTGTTCATCTCACTAGTATTTTCAAGTGGTTCAGTGGGGATTTTGGACACGACAAAGACATACTGATGTGGATAATTAATTACTTGGGTCCAAATAAAGCAGGTCTTGTGACTCATCTCTTTGGTGATTGTGGACCTGTTCATATCTCTTACCAGAATTTTGATTGGTCAATAAATTCTTGA 1887 0.4812 MGSEAEDTENEKPTQMDQSNNKLHPNTLSPENRANGYEAVTNNQISYDGGGDSHGDGKAGLLHPHSLLPMPVPPESLKANENDDAPSSLSVAGSMPTIGSYIRQRSNHLSEAIAKRVSSFRQSMEEENNEESLAKEVTEFNLSGVKVVVKQKPEEEQAMKGRISFFSRSGCRDCTAVRRFFRVKGLKFVEINIDVFTERESELRERTGSTSVPQIFFNEKLIGGLVALNSLRNSGEFERRVAELVAEKPPGDDAPAPPVYGFDYLDENRTDEMVGVVSVLRQRLPIQDRLKRMKIVKNCFEGNELVEVLVQHLDCTRNKAVEIGKQLSRKHFIHHVFGENDFEEGNHLYRFLEHEPFIPRCFNFRGATNDNEPKTTATICERLTKIMSAILESYASDDRQHVDYEAISKSEEFRRYVNMTLDLQRLNLLELSENEKLAFFLNLYNAMVIHAVISVGCPEGVIDRRSFFNDFQYLVGGHPYSLTIIKNGILRCNRRPPYSLVKPFSTGDKRLEVALVKLNQLFHFGLCNGTKSSPKVRFFSPHRVVDELRGAAREFFETDGIEVDLEKRTVHLTSIFKWFSGDFGHDKDILMWIINYLGPNKAGLVTHLFGDCGPVHISYQNFDWSINS. 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11163 628 CDD DEP 272 350 - -
Seca4g11163 628 Pfam Protein of unknown function, DUF547 430 555 IPR006869 -
Seca4g11163 628 SMART DEP_3 280 353 IPR000591 GO:0035556
Seca4g11163 628 ProSiteProfiles DEP domain profile. 280 353 IPR000591 GO:0035556
Seca4g11163 628 SUPERFAMILY "Winged helix" DNA-binding domain 271 373 IPR036390 -
Seca4g11163 628 Pfam Glutaredoxin 165 222 IPR002109 -
Seca4g11163 628 SUPERFAMILY Thioredoxin-like 160 242 IPR036249 -
Seca4g11163 628 Gene3D - 268 410 IPR036388 -
Seca4g11163 628 Gene3D Glutaredoxin 158 244 - -
Seca4g11163 628 Pfam Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP) 284 351 IPR000591 GO:0035556
Seca4g11163 628 ProSiteProfiles Glutaredoxin domain profile. 151 248 - -
Seca4g11163 628 MobiDBLite consensus disorder prediction 1 92 - -
Seca4g11163 628 MobiDBLite consensus disorder prediction 14 49 - -
Seca4g11163 628 PANTHER ELECTRON CARRIER/ PROTEIN DISULFIDE OXIDOREDUCTASE 9 627 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11163 Seca-Chr4 250080237 250085938 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11163 - - gmx:100810111 940.258