Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11157 ATGGCTGAAGACCTTCCAAAAGTGCTTGTTCTTGGTCCTCCAACATGTTTCGCAACTCTTGAACCACTCTACTCTCACAAGTTCCATTTCCTCAACCTCAAGGCCTTAGGTCTCTCTCTGCACCAATTCATCCTTTCCCACCGCCACCACCCTTCCTCCATTCTCGCCGTACTTTACAGCATCTCCTACTCCATCACCGCCGATGTCCTCGGTCTCCTGCCGTCGCTCCGCCTCGTCGTCACCGCCAGCGTCGGAACTAACCACATTGACCTCCACGAGTGCCGCCAAAGGGGGATTCAGGTCGCCAGCGCCGGAAAGGTTTTCTCAGAGGACGTGGCTGACATGGCGGTGGCGTTGCTGATTGCCGTCATGAGGAAAATTTCCGCAGCGGATCGATATTTAAGGACTCAGAATCATTCTAGCCCATGGGATTTTCCTCTTGGCTACAAGTTATCAGGAAAGCGAGTTGGGATTGTTGGATTAGGAAGCATTGGCATGGAAGTGGCCAAGCGGCTCGACTCTTTTGGATGCGTTATCTTGTACCACTCTAGGCATCAAAAGACAGTTGTTTCGTACCCTTTCTATTCTAATGTTGTTGAGCTTGCAACTTCTAGCGACGCCCTTGTCGTATGTTGTGCACTGAATGAGCAAACACGACACATGATTAACAGGGAAGTAATTTTGGCATTAGGAAAAGGAGGATTTATTGTCAATGTTGGAAGAGGGGGTCTTATTGATGAGAAGCAATTGGTCAAGTGTTTGATAGAAGGCAAAATTGAAGGTGCTGGTTTGGATGTGTTTGAGAACGAGCCTCGTGTTCCTAAAGAGCTCTTTGCAATGGATAATGTGGTTTTATCTCCACATTCAGCTACTTATACTGTAGAAAGCGTGTTGAGTTTGTGTAAAGTTATGGCAGGGAATTTAGAAGCCTTCTTCTCAAATAAGCCCTTGATTACTCCAGTTATTTTCCTGAAAGCTTTTCCCTCTAAACTCCTTCTCCCTCAATTCCTCGCCACTCACAATGTAAACCCTTCCTCCATTCGAGCCATTCTCTGCAACCCGGTCCAGCCCCTCACCGCTGACATCCTCCACCTCTTCCCTTCCCTCGGCCTCGTCGTCACCACTAGCGCCGGAACTGACCACATAGATTTGCTCGAGTGCCGCCGTCTCGCTGTTCAGGTCGTCACCGCCGCAGGCCTCTTTGCCGAGGACGTCGCCGACATGGCCGTCGGGTTGTTGATCGACGTGCTCTGCAAAATCTCCGCCGCCGATCGATATCTCAGGAATTCCGTTCCATCTGAACCGTCGAATTTTCCTCGTCGCTCTAAGCTGGGAGGCAAGAGAGTTGGGATTGTTGGATTAGGGAGAATTGGTGGGGAAGTTGCTAAAAGGCTAGAGACCTTTGATTGCAGAATTCTGTATCATTCAAGGAATGAGAAGTCATTTGTCTCATACCCTTTCTATAGCAATGTTGTTGAGCTTGCGTCAAACAGTGATGCCATTGTGATTTGTTGTCCATTAACTGAGCAAACACGGCACATAATCAACAGGGAAGTGATTTTGGCATTGGGGAAAGATGGGGTTATTGTCAATGTTGGACGGGGAGCTCTAATTGATGAAAGGGAATTGGTGCGGTGTTTGATGGAAGGGGATATAGGAGGTGCTGGTTTGGATGTGTTTGAGAGTGAGCCTCACGTTCCCAAAGAGCTCTTTTCATTGGATAATGTCCTATCACCACATGTTGCTGCACATACAGAAGAGTCTTCCAATAACAAATGTGAGGTTGTAGCAGGGACTCTAGAAGCCTTCTTTATAAGTAAATCACCAATTATTCATGCAACGAATGATTAA 1851 0.4776 MAEDLPKVLVLGPPTCFATLEPLYSHKFHFLNLKALGLSLHQFILSHRHHPSSILAVLYSISYSITADVLGLLPSLRLVVTASVGTNHIDLHECRQRGIQVASAGKVFSEDVADMAVALLIAVMRKISAADRYLRTQNHSSPWDFPLGYKLSGKRVGIVGLGSIGMEVAKRLDSFGCVILYHSRHQKTVVSYPFYSNVVELATSSDALVVCCALNEQTRHMINREVILALGKGGFIVNVGRGGLIDEKQLVKCLIEGKIEGAGLDVFENEPRVPKELFAMDNVVLSPHSATYTVESVLSLCKVMAGNLEAFFSNKPLITPVIFLKAFPSKLLLPQFLATHNVNPSSIRAILCNPVQPLTADILHLFPSLGLVVTTSAGTDHIDLLECRRLAVQVVTAAGLFAEDVADMAVGLLIDVLCKISAADRYLRNSVPSEPSNFPRRSKLGGKRVGIVGLGRIGGEVAKRLETFDCRILYHSRNEKSFVSYPFYSNVVELASNSDAIVICCPLTEQTRHIINREVILALGKDGVIVNVGRGALIDERELVRCLMEGDIGGAGLDVFESEPHVPKELFSLDNVLSPHVAAHTEESSNNKCEVVAGTLEAFFISKSPIIHATND. 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11157 616 CDD HPPR 336 604 - -
Seca4g11157 616 ProSitePatterns D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 156 183 IPR029752 -
Seca4g11157 616 Gene3D - 344 605 - -
Seca4g11157 616 CDD HPPR 6 313 - -
Seca4g11157 616 Pfam D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 58 321 IPR006139 GO:0016616|GO:0051287
Seca4g11157 616 Gene3D - 50 316 - -
Seca4g11157 616 ProSitePatterns D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 449 476 IPR029752 -
Seca4g11157 616 Pfam D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 347 609 IPR006139 GO:0016616|GO:0051287
Seca4g11157 616 SUPERFAMILY Formate/glycerate dehydrogenase catalytic domain-like 55 139 - -
Seca4g11157 616 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 109 291 IPR036291 -
Seca4g11157 616 Gene3D - 109 293 - -
Seca4g11157 616 Gene3D - 402 585 - -
Seca4g11157 616 FunFam Putative 2-hydroxyacid dehydrogenase 109 293 - -
Seca4g11157 616 SUPERFAMILY Formate/glycerate dehydrogenase catalytic domain-like 346 429 - -
Seca4g11157 616 FunFam Putative 2-hydroxyacid dehydrogenase 402 585 - -
Seca4g11157 616 PANTHER 2-HYDROXYACID DEHYDROGENASE-RELATED 5 317 - -
Seca4g11157 616 Pfam D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 117 290 IPR006140 GO:0051287
Seca4g11157 616 Pfam D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 411 582 IPR006140 GO:0051287
Seca4g11157 616 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 402 583 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11157 Seca-Chr4 250015701 250023263 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11157 K15919 - cave:132187947 488.419
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g11157 4 250015701 250023263 Seca4g11157 4 250015701 250023263 ECH