Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11155 ATGAACGGCGGTGGAGGTGACTTGCCTTCGCCGTCGCCGGCTAACGGCGGCGAGTACCTCCTCTCTCTTATCCAGAAACCCCACCACCACAACACCCCCCCTCCACCAACCGCGCCGCCGCCTCCGCAACAATCTCCGGCCATCGATCCAGCCGTTGCCTTCATGGGACCCACGATCCCTGTCGCTGCTTCTCCGTGGCCAAGCAACGGTCAAGATCATCTTCATCATCTCCCTCATCCTCATCACCTTCTTCCTCCATGGTCCCACACCCTCTCTTCCCCTTACCAGCCAAGCCTTTTCGGGTTGCCCCAGAACCCGTTTCCACCTCATCGGGTACCCGGTAATCACTACCCCGCTTCCCCAATTCACTTGAATAACACTCTCAGTGACGATCTGCGAAGATTAGGGTTTCCGATTGAAGCGAACGACGCCGTTCAGCAGCAGGAACTCAAGTTAAAGTTCGGGTCTTTACCCACCGTTGCATATACTGCCCCTGAAGTTTCATCCAATGGGGATTCCTTTTCCAATTTGAAGTTCAACAGAATCTATAACGGGTTTGATAGGAACTTGCTCGTGGACCCCCCTAGTAATCATGATGTTGTTGACCTAGAAAGAAGAGGTGTTGGGAATTTGAGGACTATTGGTTCATCCCCTGAAACAAGTAGGGCTCCACCAGGGTTTGGGAACAAGGCCAGGGGAAAGGGTCATTGGGGTTCTGGCACTGGAAGTAGGGGCTCAGAGGTCAGTGAGGTTAGTGACTTGGGTGCTAGGAATGAGAATTTGTATGCTAAGAAGGAAAGTGTGAGAATGCAGTCTGGTGAAAGGGGCAACACTAGAGGCAATGTGGCACGTGAAATGGGGCTTCCTGATCAGCTTGATCACCCTGGGCCACCCTCCGGGAGTAACCTCCATTCGGGCTTGGCTGCTTCCCGTATTGAAGAGTCTAGGTCCAATTCCAACAGTGTCATTGTTGACGGTGTTAGAGATAAGCATAAGGGAGTTAGTAGATCAAAGATGGAGGAGGGTATTCCTGACTCTGGTAGAGGTGGTGCTGATGTTGATGTCATTGGGGAGCAGTTAGCTGATTCCTTGCTGCTTGAGGATGAGTCTGATGACAAGAATAACCCGAGGCAACGACGCGCTCGGGAGAAGTATCAGGATGCTAGATCATCAGACTCAAGAGGACAACAACTGCTAAGCCAGCGGGCAAGAATATATAAGAGACAGATGATGTGCCGAAGGGACATAGACAGTCTTAGTGTTCCTTTCCTTGCAATATATGAGTCTCTAATACCCCCTGAAGAAGAAAAGCTGAAACAAAAACAATTACTAGCGTTATTGGAGAAATTAGTTAGCAAGGAGTGGCCAACAGCTCGGCTTTTTATCTATGGATCATGTGCCAATTCATTTGGTGTTTCTAAAAGTGACATTGATGTTTGTCTTGCTATTGAGGAAGCAGACATGGACAAATCTAAGATTATAATGAAATTGGCAGATATTTTGCAATCAGATAACCTGCAGAATGTACAGGCATTGACGCGAGCAAGGGTTCCTATAGTAAAGCTCAAGGATCCAGTTACAGAAATTTCTTGTGACATATGCATCAACAATCTCCTGGCTGTTGTAAATACAAAGCTTCTTCGGGATTATGCACACATAGATTCGAGGTTACGGCAGCTGGCTTTTATTATTAAACATTGGGCAAAGTCAAGAGGAGTCAATGAAACTTACCATGGGACCTTATCTAGCTATGCGTATGTTTTGATGTGCATTCATTTTTTACAAATGCGAAGGCCTGCTATCCTTCCATGCTTACAGGGAATGGAGGCAACATACTCTGTGACTGTGGATGATATTGATTGTACTTACTTTGACCAAGTTGAAAAACTCTCTGATTTTGGGCGGAATAACAAGGAAACTATTGCTCATCTTGTGTGGGGTTTTTTCTATTACTGGGCATATTGTCATGACTATGCAAATGCTGTTATATCTGTACGTACTGGAAGTCTAATCAGCAAGCGAGAGAAAGACTGGACAAGAAGGATTGGTAATGATCGCCATTTGATATGTATAGAGGATCCTTTTGAAACATCTCATGATCTGGGTCGAGTGGTGGATAAACATAGCATCAAAGTTCTTAGAGAAGAGTTTGAACGTGCTGCTGATATTATGCAGTATGATCCAAATCCTTGTATTAAACTTTTTGAGCCCTATGTTCCCAGTTGA 2226 0.4623 MNGGGGDLPSPSPANGGEYLLSLIQKPHHHNTPPPPTAPPPPQQSPAIDPAVAFMGPTIPVAASPWPSNGQDHLHHLPHPHHLLPPWSHTLSSPYQPSLFGLPQNPFPPHRVPGNHYPASPIHLNNTLSDDLRRLGFPIEANDAVQQQELKLKFGSLPTVAYTAPEVSSNGDSFSNLKFNRIYNGFDRNLLVDPPSNHDVVDLERRGVGNLRTIGSSPETSRAPPGFGNKARGKGHWGSGTGSRGSEVSEVSDLGARNENLYAKKESVRMQSGERGNTRGNVAREMGLPDQLDHPGPPSGSNLHSGLAASRIEESRSNSNSVIVDGVRDKHKGVSRSKMEEGIPDSGRGGADVDVIGEQLADSLLLEDESDDKNNPRQRRAREKYQDARSSDSRGQQLLSQRARIYKRQMMCRRDIDSLSVPFLAIYESLIPPEEEKLKQKQLLALLEKLVSKEWPTARLFIYGSCANSFGVSKSDIDVCLAIEEADMDKSKIIMKLADILQSDNLQNVQALTRARVPIVKLKDPVTEISCDICINNLLAVVNTKLLRDYAHIDSRLRQLAFIIKHWAKSRGVNETYHGTLSSYAYVLMCIHFLQMRRPAILPCLQGMEATYSVTVDDIDCTYFDQVEKLSDFGRNNKETIAHLVWGFFYYWAYCHDYANAVISVRTGSLISKREKDWTRRIGNDRHLICIEDPFETSHDLGRVVDKHSIKVLREEFERAADIMQYDPNPCIKLFEPYVPS. 742
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11155 741 Pfam TUTase nucleotidyltransferase domain 435 533 IPR045100 GO:0016779
Seca4g11155 741 SUPERFAMILY PAP/OAS1 substrate-binding domain 556 725 - -
Seca4g11155 741 Gene3D Beta Polymerase, domain 2 440 553 IPR043519 -
Seca4g11155 741 MobiDBLite consensus disorder prediction 303 324 - -
Seca4g11155 741 FunFam Terminal uridylyltransferase cid1 440 553 - -
Seca4g11155 741 SUPERFAMILY Nucleotidyltransferase 416 552 IPR043519 -
Seca4g11155 741 Gene3D - 554 722 - -
Seca4g11155 741 MobiDBLite consensus disorder prediction 325 347 - -
Seca4g11155 741 MobiDBLite consensus disorder prediction 29 47 - -
Seca4g11155 741 Pfam Cid1 family poly A polymerase 641 699 IPR002058 -
Seca4g11155 741 MobiDBLite consensus disorder prediction 211 396 - -
Seca4g11155 741 CDD NT_PAP_TUTase 448 551 - -
Seca4g11155 741 FunFam Terminal uridylyltransferase cid1 554 722 - -
Seca4g11155 741 MobiDBLite consensus disorder prediction 366 390 - -
Seca4g11155 741 MobiDBLite consensus disorder prediction 1 50 - -
Seca4g11155 741 PANTHER POLY A POLYMERASE CID PAP -RELATED 288 727 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11155 Seca-Chr4 249986720 249993377 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11155 - - gmx:100812787 937.562
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g11155 4 249986720 249993377 Seca4g11155 4 249986720 249993377 ECH