Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11113 ATGAGGAGCTCAGAGCAGAAAACAAGGAAGTCAATTGAGGAAATAAGGAATCTGAGATTGATCACTGCTGTTGTAACTCCATACCTTCCCAATGGCCAAATTGATCTTGAAACATATGATAACTTGGTGAACATGCAAATTGCAAATGGCGCTGATGGTATTCTTGTTGCTGGCACAACTGGTCAAGGCCAATTGATGACCTTGAATGATAAAATAATGCTAATTGCACACACAGTCAACCGTTTTGGTGACAAAGTTAAGGTTATTGGCAATGCAGGAAGCAACAACACAGCACAAGCAATTATTGCCAGTGAACAGGGTTTTGCTGTTGGAATGGATGCTGCACTTCATATAAACCCTTACTATGGCAAAACCTCAATGGATGGTTTGATTGCTCACTATGATAGTGTCCTTTCCATAGGGCCCCTTATCATATATAACATACCAACAAGGACTGCTCAAGATATTCCTCCTAGTGTGGTTGAAATCTTGGCTCAAAATCCTAACTTTGTTGGTATCAAGGAGTGTGTGGGAAATGACAGGGTCAAACTCTATGCAGATGAAGGGATTGTTGTGTGGACTGCAAATGATGAAGAAAGTCATGATGCTAGATGGGAATTTGGAGCTGTTGGGGATATGTCTGTTGCTAGCAATTTGATTCCTGGTTTGATGCATGAACTCATGTTTGGAGGTAAGAATCCTGCACTGAATTCAAAGCTTATGCCTCTGTTTAATTGGCTTAACCTGGCACCAAACCCAATTGCTTTGAACACTGCTCTTGCTCAACTTGGGGTTATCAAGCCAGTTTTCAGGCTACCACATGTGCCTCTGCCTTTGGAAAAGAGGATAGAGTTTGTCAAATTGGTGAAGGAATTGGGCCGAGAGCATTTTGTTGGAGACAAAGATGTTGAAGTCCTTGATGACCATGACTTTATCATAGTTGCTCGATATTGA 954 0.4151 MRSSEQKTRKSIEEIRNLRLITAVVTPYLPNGQIDLETYDNLVNMQIANGADGILVAGTTGQGQLMTLNDKIMLIAHTVNRFGDKVKVIGNAGSNNTAQAIIASEQGFAVGMDAALHINPYYGKTSMDGLIAHYDSVLSIGPLIIYNIPTRTAQDIPPSVVEILAQNPNFVGIKECVGNDRVKLYADEGIVVWTANDEESHDARWEFGAVGDMSVASNLIPGLMHELMFGGKNPALNSKLMPLFNWLNLAPNPIALNTALAQLGVIKPVFRLPHVPLPLEKRIEFVKLVKELGREHFVGDKDVEVLDDHDFIIVARY. 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11113 317 PANTHER DIHYDRODIPICOLINATE SYNTHASE 12 301 IPR002220 GO:0016829
Seca4g11113 317 ProSitePatterns Dihydrodipicolinate synthase signature 2. 146 176 IPR020625 GO:0016829
Seca4g11113 317 Pfam Dihydrodipicolinate synthetase family 19 291 IPR002220 GO:0016829
Seca4g11113 317 CDD DHDPS 19 289 IPR005263 GO:0008840|GO:0009089
Seca4g11113 317 SUPERFAMILY Aldolase 20 293 - -
Seca4g11113 317 PRINTS Dihydrodipicolinate synthase signature 50 71 IPR002220 GO:0016829
Seca4g11113 317 PRINTS Dihydrodipicolinate synthase signature 86 104 IPR002220 GO:0016829
Seca4g11113 317 PRINTS Dihydrodipicolinate synthase signature 141 158 IPR002220 GO:0016829
Seca4g11113 317 PRINTS Dihydrodipicolinate synthase signature 118 134 IPR002220 GO:0016829
Seca4g11113 317 Gene3D Aldolase class I 11 317 IPR013785 -
Seca4g11113 317 PIRSF DHDPS 12 304 IPR002220 GO:0016829
Seca4g11113 317 SMART DHDPS_2 17 293 IPR002220 GO:0016829
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11113 Seca-Chr4 249519875 249521233 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11113 K01714 - gmx:100806626 496.893
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g11113 4 249519875 249521233 Seca4g11113 4 249519875 249521233 ECH
Seca4g11113 4 249519875 249521233 Seca2g01161 2 18765194 18767878 PCT