Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11097 ATGCAGGATGACAAGGAAAAGCAACTTCTGCTGGCAAAAGCCATTAAGACATTAAATGAAAACGTGCTTCCAGAGTATGCATATCCTCTTTTACAATCTTCATGCAATATCAACCGGGATGAGACTGTGAAGGAAAAGCGTAGGAGGGTTGTCCACTTTTTAAAAGAAGGATTGGAGGTTCCACATGATGATGAGCTGTCCAAGAAACAAGATTTTCCCTGTAGAACTGAACCTGAGACAGAGGAGATTCATTTGACACAGGCTCAGGAGTTTGAGGAAAATGACACCATTCAACCAATTAGAACAGAAGGAAAAGTCTTAAGCACAACATCTGTTCCTTTGGAGTCCACTCAAGAACCAGTTCAAGGAAATGAAGTTGTAAATTATAAATCTGTCGCTGAACCTCTGGCTGACATTTCCATTGACACGCGACCTGATGAAATTAGAAGTTCTTCTCCCACGTCTTGTTCTAATGACGAGATAAAAAGCACCAAGTCAAAGGACAAGACAGGTGGGAACCCTGCCACCAATTTCAATGAATTGAAAAACCTTCCAGATTTTTCTGCACAGAGACCTTTGACTGCTCCTACTGTTGTGCATGTATACAGACCACCTGAGGTTGAAGCCAAAAGAAAGGATCTGCCTATAGTCATGATGGAGCAAGAGATAATGGAAGCTATAAATGAGCATTCCAGTGTCATCATTTGTGGCGAAACTGGGTGTGGTAAAACAACTCAAGTTCCCCAGTTTCTTTATGAAGCTGGCTATGGTTCAAGTAAGTCTCATGCTCACAATGGTATTATTGGTGTTACTCAACCACGTCGGGTGGCTGTTCTTGCCACAGCAAAGCGTGTGGCATATGAGCTTGGTCTTCATCTAGGGAAGGAGGTTGGCTTTCAAGTTAGATATGACAAGAGAATTGGAGAAAATTGTTCTATCAAGTTTATGACTGATGGCATTTTACTACGAGAAGTTCAGAATGATATTTTACTGAGGCGTTATTCTGTCATAATTCTTGATGAGGCTCATGAGAGGAGCTTGAACACAGACATTCTGATTGGGATGCTTTCGCGTGTAATTGAAACTCGTCAAAAGATTTATAATGAACAGCAGAAGATGATCCTTTCAGGGGAAAGTATAAATCCTGAAGACATGGTTTTTCCATTAAAACTTGTGCTGATGAGTGCCACCTTGCGAGTGCAAGACTTTACTTCTGGAAGGTTATTCCATACTCCTCCTCCTGTTATAGAAGTTCCTACGAGGCAGTTTCCAGTAACAGCATATTTCGCTAAGAAAACGGAGAAAACAGATTATGTTGGAGCAGCATATAGGAAGGTCTTGGCAATTCACAAGAGGTTGCCACCTGGGGGCATACTTGTCTTTGTCACTGGACAAAGGGAAGTAGAGGACTTGTGCCGGAAGCTACGCAAAGCTTCAAGGGAGTTTATTGTAAAAAAAGTTAAAGGCTCTGCAGAAACTGATGGCACTATGGTCTGTGAAACAAATTCTGTTGAGGGAATAAATATTAATGAGATTAATGAAGCATTTGAGATTCCTGAAAGTTCAGCCATCCAGCAAACTGATAGGTTTAGTGGTTTTGATGAAGATGGTGATGATGTAGATTGGAATGAATCTGTTTCTTCTTATAATTCAGAAGCAGAGAGTGAACTGGAATTCAATGATGATGATAATCTGGAGCATTCAGAGAACAAGAGTAATATTGTGGATGTCTTGGGAAATGAAGGAAGTTTTGCTTCACTTAAGGCTGCTTTTGAAAAATTGTCTGAGCAAGCTCCATTAAGCTCCTCAAATGGGGAGCAGACATCTTCTGTGAATACAGGAGATGATGTAGACCAATCAAAAGTTTTAAGGGAGAAAAGAGCTAGAGAAAATTGCAGCCCTTCTCCAGGTGCACTCTTTGTTCTACCGCTTTATGCCATGCTTCCTGCTGCAGCTCAACTTCGTGTATTTGAGGAAGTGCAGGAGGGAGAGCGGCTTGTTGTCGTTGCTACAAATGTTGCTGAAACATCTTTGACAATCCCAGGGATAAAGTATGTAGTTGATACTGGAAGGGAAAAGGTGAAGAATTATGATTCCTCTAATGGTATGGAGACCTATGAAGTACAATGGATAAGCAAGGCATCTGCTGCTCAGCGAGCAGGCAGAGCTGGAAGAACTGGACCTGGGCACTGTTATCGTCTCTATTCTTCTGCAGCCTTTAGTAATGAGTTTCCTGAGTACTCTCCTGCTGAAGTTGAGAAAGTACCTGTTCATGGTGTTGTCCTTCTCTTGAAATCCATGCATATTAAGAAGGTTGCAAACTTCCCATTTCCTACTTCTATTAAGGCTGCTTCCCTGCTTGAAGCTGAGAATTGCTTGAAAGCTCTTGAGGCACTCGATAGCATGGATGAACTTACACTATTGGGAAAAACCATGGCACTTTATCCCTTGAGTCCTCGTCATTCTAGAATGATCCTCACTGTTATTAAAAATTCAAGGCACGGGATTAAATGTAATCCAAGTCTGCTTTTGGCATATGCTGTTGCAGCTGCTGCAGCATTGAGTTTGTCAAATCCTTTTGTAATGCAATATGAAGAAAATGATAGAAGCAGAGATTCAGGGATGTCTGAAAAATCAAGCATGGGAGACACTGAGAAGGACATTGATAAAAAAGAAAAGTTGAGGAGGAAGAAGCTGAAAGAAACTACTAAAGTGGCGCGTGAAAAGTTTCGTGTTGTCACTAGTGATGCCCTAACCATATCTTATGCTTTGCAGTGTTTTGAACAATCACAGAAGTCTGTAGAATTCTGTGATGACAATGCATTGCATTTCAAAACCATGGAGGAAATGTCCAAACTTAGACAACAGCTACTTAAACTGGTCTTTTACCAGAGTGATAAAGGTGGTTTTGAAGAGTACTCATGGATTCATGGAACTCTGGAGGATGTTGAACATGCTTGGAGGGTTTCTTCTGCAAAATATCCTCTTTCTCTTCTTGAGGAAAGGCTCATCTGTCAAGCAATATGTGCTGGTTGGGCAGACAGGGTTGCCAAACGTATTACAGCTTCTTCTAAGGCCACTGATGGAGAGAAAAGTTTCCGTGCTGTTAGGTATCAATCATGCATGGTTGAAGAAAGTGTTTTCCTTCATCGTTTGTCATCAGTTTCCATTGTAGGCCCTGAGTTTGTGGTTTACAATGAACTATTAGAGACAAAAAGACCAAACAAAGATGGGGTAACAAGTGCAAGGAGAGCATACATTCATGGAGTAACAAGTGTGGAGCCAGCTTGGCTAGTTGAGCATGCCAAGTCTTCATGCATCTTCTCTCCACCCCTGATGGATCCCAGACCTTTTTATGATGCGCAGACTGACCAAGTAAAATGCTGGGTCATCCCAACCTTTGGGCGATTCTGTTGGGAGCTTCCAAAGCATTCATTGCCCATTAGCAATGATGAGCATCGGGTGCAAGTGTTTGCCTATGCTTTGCTTGAAGGCCAGGTGTGTCCATGTTTAAAATCTGTTCGAAAATACATGTCAGCCCCTCCTGAAAGTATTATGAAGAGAGAAGCATACAGCCAAAAAAGGGTGGGCAATCTTTTAAGCAAGTTAAAGAGCAGGCTGATTGATAGTTCTGCTATGTTAAGAATGGTGTGGAAGGAGAATCCAAGGGAATTATTTTCAGAAATTTTGGATTGGTTTCAGCAGAGTTTTCATAAACACTTCGAAGAGTTATGGTTACAAATGCTTAGTGAAGTGCTTCTGGAGGCACAAGTACACCCTCTGGGTAAAAGTTTTAAAAAGAAATCGAAAGGAAAATCTAAAATGCTGCGATGA 3834 0.4144 MQDDKEKQLLLAKAIKTLNENVLPEYAYPLLQSSCNINRDETVKEKRRRVVHFLKEGLEVPHDDELSKKQDFPCRTEPETEEIHLTQAQEFEENDTIQPIRTEGKVLSTTSVPLESTQEPVQGNEVVNYKSVAEPLADISIDTRPDEIRSSSPTSCSNDEIKSTKSKDKTGGNPATNFNELKNLPDFSAQRPLTAPTVVHVYRPPEVEAKRKDLPIVMMEQEIMEAINEHSSVIICGETGCGKTTQVPQFLYEAGYGSSKSHAHNGIIGVTQPRRVAVLATAKRVAYELGLHLGKEVGFQVRYDKRIGENCSIKFMTDGILLREVQNDILLRRYSVIILDEAHERSLNTDILIGMLSRVIETRQKIYNEQQKMILSGESINPEDMVFPLKLVLMSATLRVQDFTSGRLFHTPPPVIEVPTRQFPVTAYFAKKTEKTDYVGAAYRKVLAIHKRLPPGGILVFVTGQREVEDLCRKLRKASREFIVKKVKGSAETDGTMVCETNSVEGININEINEAFEIPESSAIQQTDRFSGFDEDGDDVDWNESVSSYNSEAESELEFNDDDNLEHSENKSNIVDVLGNEGSFASLKAAFEKLSEQAPLSSSNGEQTSSVNTGDDVDQSKVLREKRARENCSPSPGALFVLPLYAMLPAAAQLRVFEEVQEGERLVVVATNVAETSLTIPGIKYVVDTGREKVKNYDSSNGMETYEVQWISKASAAQRAGRAGRTGPGHCYRLYSSAAFSNEFPEYSPAEVEKVPVHGVVLLLKSMHIKKVANFPFPTSIKAASLLEAENCLKALEALDSMDELTLLGKTMALYPLSPRHSRMILTVIKNSRHGIKCNPSLLLAYAVAAAAALSLSNPFVMQYEENDRSRDSGMSEKSSMGDTEKDIDKKEKLRRKKLKETTKVAREKFRVVTSDALTISYALQCFEQSQKSVEFCDDNALHFKTMEEMSKLRQQLLKLVFYQSDKGGFEEYSWIHGTLEDVEHAWRVSSAKYPLSLLEERLICQAICAGWADRVAKRITASSKATDGEKSFRAVRYQSCMVEESVFLHRLSSVSIVGPEFVVYNELLETKRPNKDGVTSARRAYIHGVTSVEPAWLVEHAKSSCIFSPPLMDPRPFYDAQTDQVKCWVIPTFGRFCWELPKHSLPISNDEHRVQVFAYALLEGQVCPCLKSVRKYMSAPPESIMKREAYSQKRVGNLLSKLKSRLIDSSAMLRMVWKENPRELFSEILDWFQQSFHKHFEELWLQMLSEVLLEAQVHPLGKSFKKKSKGKSKMLR. 1278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11097 1277 CDD DEXHc_DHX37 214 418 - -
Seca4g11097 1277 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 335 344 IPR002464 -
Seca4g11097 1277 CDD SF2_C_RHA 623 735 - -
Seca4g11097 1277 SMART ultradead3 212 428 IPR014001 -
Seca4g11097 1277 MobiDBLite consensus disorder prediction 597 617 - -
Seca4g11097 1277 MobiDBLite consensus disorder prediction 168 182 - -
Seca4g11097 1277 FunFam ATP-dependent RNA helicase DHX37/DHR1 176 421 - -
Seca4g11097 1277 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 224 416 IPR014001 -
Seca4g11097 1277 Pfam Helicase associated domain (HA2) 789 919 IPR007502 GO:0004386
Seca4g11097 1277 MobiDBLite consensus disorder prediction 146 160 - -
Seca4g11097 1277 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 1004 1103 IPR011709 -
Seca4g11097 1277 MobiDBLite consensus disorder prediction 597 619 - -
Seca4g11097 1277 Pfam DEAD/DEAH box helicase 221 402 IPR011545 GO:0003676|GO:0005524
Seca4g11097 1277 Gene3D - 422 524 IPR027417 -
Seca4g11097 1277 Gene3D - 607 747 IPR027417 -
Seca4g11097 1277 FunFam ATP-dependent RNA helicase DEAH13 422 527 - -
Seca4g11097 1277 Pfam Helicase conserved C-terminal domain 611 727 IPR001650 -
Seca4g11097 1277 SMART helicmild6 617 727 IPR001650 -
Seca4g11097 1277 MobiDBLite consensus disorder prediction 138 182 - -
Seca4g11097 1277 MobiDBLite consensus disorder prediction 867 892 - -
Seca4g11097 1277 MobiDBLite consensus disorder prediction 530 568 - -
Seca4g11097 1277 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 586 768 IPR001650 -
Seca4g11097 1277 Gene3D - 175 421 IPR027417 -
Seca4g11097 1277 SMART ha2_5 788 921 IPR007502 GO:0004386
Seca4g11097 1277 PANTHER ATP-DEPENDENT RNA HELICASE 170 1107 - -
Seca4g11097 1277 Gene3D - 778 899 - -
Seca4g11097 1277 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 209 831 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11097 Seca-Chr4 249257965 249265389 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11097 K14780 - gmx:100788201 2005.72