Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11058 ATGGCTGGTGAATCTGATGTGTCCGTAAATACCCTCTCCTGTGCTAACTGCGGAAAACCTGCAAATCTTCAGTGTCCAAAATGCTTGGAATTGAAGCTGCCTCGTGAAGGTTCTGCATTCTGCACTCAGGAATGTTTCAAGTCTTCATGGAGCTCGCACAAATCAGTGCATCTGAAGGCAAAGCTAACCTCAATTGGCACGCAGAATTCAGACTCACTTGGTGAAGGTTGGTTATATTGCGTGAAGAGAGGACAGGGTCGAACTCCAAAGCTTCCTCATTTTGATTGGACTGGGGCACTGCGGCCATATCCCATATCTAGTAAACGGATTGTCCCAGCTCCTATTGATAAACCCGATTGGGCTGATGATGGAATTCCCAAAGTTGAGCCCAATAGTAATCTGCAGCATACTGTTGAGATCAAATCTCCAGATCAAATTGAAAGAATGAGAGAAACATGCCGGATTGCGAGAGAGGTGTTGGATGCAGCTGCTCGGATTATTCAGCCTGGTGTGACAACTGATGAGATTGATAGAGTAGTTCATGAGGCAACCATTGCTGCAGGAGGATACCCATCACCTCTAAATTACCATTTCTTCCCTAAATCTTGCTGCACGTCCGTTAATGAAGTAATCTGCCATGGAATTCCTGATGCAAGGAAGCTTGAGGATGGTGACATTGTAAATGTTGATGTTACTGTGTGCTATAAAGGTGTTCATGGTGATCTCAATGAAACATACTTTGTTGGAAATGTTGATGAAGAGTCTCGCCAGCTGGTGAAATGCACATATGAGTGCCTGGAGAAGGCAATATCCATTGTTAAACCCGGGGTACGATTTCGTGAAATTGGTGAAGTTATTAATCGTCATGCTTCAATGTCAGGCTTCTCAGTGGTAAAATCATATTGTGGTCATGGAATTGGAGAGCTATTCCATTGTGCACCAAACATTCCTCATTATGCAAGTATCCTTTACTTGGTTTAA 981 0.4363 MAGESDVSVNTLSCANCGKPANLQCPKCLELKLPREGSAFCTQECFKSSWSSHKSVHLKAKLTSIGTQNSDSLGEGWLYCVKRGQGRTPKLPHFDWTGALRPYPISSKRIVPAPIDKPDWADDGIPKVEPNSNLQHTVEIKSPDQIERMRETCRIAREVLDAAARIIQPGVTTDEIDRVVHEATIAAGGYPSPLNYHFFPKSCCTSVNEVICHGIPDARKLEDGDIVNVDVTVCYKGVHGDLNETYFVGNVDEESRQLVKCTYECLEKAISIVKPGVRFREIGEVINRHASMSGFSVVKSYCGHGIGELFHCAPNIPHYASILYLV. 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11058 326 SUPERFAMILY HIT/MYND zinc finger-like 11 55 - -
Seca4g11058 326 CDD MetAP1 146 320 IPR002467 GO:0006508|GO:0070006
Seca4g11058 326 Gene3D - 4 61 - -
Seca4g11058 326 Gene3D Creatinase/methionine aminopeptidase superfamily 94 322 IPR036005 -
Seca4g11058 326 Pfam zf-MYND-like zinc finger, mRNA-binding 15 58 IPR031615 -
Seca4g11058 326 NCBIfam methionine aminopeptidase, type I 139 320 IPR002467 GO:0006508|GO:0070006
Seca4g11058 326 SUPERFAMILY Creatinase/aminopeptidase 93 320 IPR036005 -
Seca4g11058 326 ProSitePatterns Methionine aminopeptidase subfamily 1 signature. 301 319 IPR002467 GO:0006508|GO:0070006
Seca4g11058 326 PRINTS Methionine aminopeptidase-1 signature 203 216 IPR001714 -
Seca4g11058 326 PRINTS Methionine aminopeptidase-1 signature 225 241 IPR001714 -
Seca4g11058 326 PRINTS Methionine aminopeptidase-1 signature 295 307 IPR001714 -
Seca4g11058 326 PANTHER METHIONINE AMINOPEPTIDASE 11 320 - -
Seca4g11058 326 Pfam Metallopeptidase family M24 147 318 IPR000994 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11058 Seca-Chr4 248891995 248896912 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11058 K01265 - gmx:100813779 627.861