Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g10987 ATGGCTCACCGTCAACTCATGGACTCGCTCACCTCTCACATCTCCCTCTACCATTCACAATCCCCAAATCCCAACCCTAACCCTAACCCTAACCCTAGAACCTCGATTCTCAAGTGGTTCTCCTCCCTCTCCCTTCACCAGCGCCTCGCTCATCTCACCATTGTGGATTCCAATTTCGTCCAGATCCTCCTCCAGATGCTCGCCAAGCTCCGCGCCAACGGCCATGGCTCCTTTATTATCCTCCCCGATCTTCCCTCTCGGGACTCGCCATTCATCCCGACCCTATGCTTCAAGAAATCGCGCGGCCTCCTCGCCCGCGTCGCCGACTCGGACCGCGCCGGCCGGTGGCTCTTCGAGTCTGCCCGGCTGTTCGAGTCGCACGAGGGGGAGAATGTCGCCACCTGCTCGTGCTCCCCGAGTCGCCTTGATGCGGTGACCCTCGCCGAGGACCTCGTGGAAGATGTAGACCGATTCGTGGAAGCCATGGACCGGATTTCTAACGGTGGGTTCCTCAGAGGGGAAGAGGCTGAGCTCGGCGTGGATTGGGTGGAGCTGAATTGGCTGAAATCGAAGGGATATTATGGCATTGAGGCATTTCTCGCGAACAGGATCGAGGTATCCATGAGGCTGGCTTGGTTGAACAGCAGTAGTGGGAGGAAGAGGGGTGTGAAATTGAAGGAGAAGTTGAATGCGGCTGGAGTGGCCGCCAATGTGTATTGGAGGAAGAAGGGCTGTGTGGACTGGTGGGGGAATTTGGATGCTGTGACGAGGAAGAAGGTCTTCACCACCATCATCATGAAAGCCGCAAAACATTTGACATGCGAGGTTTTGAAAGTGGCAAGTAGTGCCTCTGAGGGTGAGATTTGGCTATACAGTACAGGAGTAGATAAATTACTGCAATACAATCGACCCGCATCAGCTCAAAGGACCATCCCAACATTTCCTGATGATACAGAATTTGGAACAGTTATTACACCAGTTACTTTTTGTAAAAAACCTGCTGCTTTAGTCAGAGCATTTAATTCCTTATTTGTGCTTCAGGATGTTATTATGATGATAACATCAAGTCTTAATAACAAACATGATATAGGGAAGCTTTTCTTTAGTTCACTGGATTCTGTCTGTACAATATCTGATTGTATATTAAGAAAAATGCGAGGTTTTATTATGGTAATTTCACTTGACTGCACAAAACTTGAGCTATTTGAGGATGAACTTGACAAGTCTTCATCTGGTAAATCTAAAGAAAAGCTTAGTGTTTCTAACCGTAAAAAGAAGGGACGAACCCGCAATACTAAAAGGCAAAATCCTGTCCCAAAGACGTGTGTGGATGGTACATCACATGATCCACTTAAGGACATTGATCGTGTAGTGGACAATAAAAAGAAGACTGATTTTGTGGGATCCAGAGAACTTCCTGATGTTCCTCTGGGGAAAGAGATTTCTATGGGGAGCTCATCATCAACTGTAAAAATGGATCATACTCAGGATTCGGATGTTGGAAAACTTCGAACCACTCCAAGAAGAGGTAGAAAAGAGAAAAGTAAAAATAAAAACACCCGTGTTGACAGTGCAGTTCGAGATTCTCAAAAGTCAAGTATGAATGCTGCCTCTACCACTGTTATTTCTGAAGGTGAGGTGGCAACATGTGATAGGTTTTTTGATAGTACTACCATTCAGAATGTCAAAAATGACAATTCAATTGGTAATGACATCCTTGCTTCAAATTCAAGCCTTTGTAGTTCTCTTAGTGGGCTTACTAAGGAGAACAGTTCTGCCAGGAAAGTTGAAGGAGAGAATATTGAAGATATTGCTGAAAGTTGCAATAGTTCGGGTCCTCAGTGTTGTATATTGTCAAATGAAAGGAAAGAGTTGTCTTCTGGATTAGATACTTTAACTTGTGATGCAGATTGTGAAGCTATAACTCCGCCTATACCTGCATTGAAGCATGGTAGTTTCTTCAGCAATGAAGATACCTGTCCTTTGAAGACAACATGTGCTGCCAAAGCTGATGTAAAGTCAACTGTTCATGACAAACCAATTAGAGAGGTTAATGTAAAAGAATATGGGATGTTGAAGGAGCAAGATAGATGTCTATTTGAAAGTAGAAATTCAGCATTCTCAAAATGCAGTCCATATGAATGGCCCGGTATACCTTCCATCTATTTTCCATCTTTTAACTCACATCTCCCTCCTGCCACAGATAGATTGCATCTGGATGTTGGGCGCAATTGGCATAATCACTTCTGCTACCCATTTGTTCCTACATTGCCACAGGCAAGAAATACATCAATTGAAGGTGGATGCAACCAAATCCTACCGCATCCTATTCCTATGAGTTTTGACTGGCCCCCAGTTTTTCGTGGTGGCATGACCCCATCACCAAACTGTAATTATGACTCTGGTTTTATGTCCAGGAGGCAATGTACCTTTTCAAAAGGATTGCCTGTTCACAGCGTACAGGTTGATGCAACATCTCCTGATGATGAAAGAAAGTATTCTGGGGATATATTGGATTTACCTGATCTAACAAATGGACAGGAGCTAGCAGATGAATTTGACAATCACTGTGTATCAGAGGAAGAATATGATTTTCATGCTGTTTCTGATATAGATTATAATCAATATTTTGGTGGTGGCATAATGTACTGGAATCCTTCTGATCATCCAGGAAAAGGTTTCTCCCGGCCTCCCTCTCTTAGCTCTGATGATAGTATATGGGCTTTACGTGAAGCTGACGTGAATAGGACAGTGGATGACATGGTTGCTTTTCCATCTTCATATAACACAAATGGTTTAACGTCACCAACTGCTGCAACATTTTGTTCTCCTTTTGATCCTGTAGGGACTGGGTCCCAGACTGTTGGTTTTGTGATGTCAGGTAATGAAGTACTGGGAAAGGTGTTGCATTCGTCATCAGCTACAGATGCAGCAGTGGATGAAGATACTTCTGGTTCTTTGGGTAACAACTTACCTGGAGAAATTGAAGGGAAGGCAGGTGATTCACATCCATATCCCATTCTACGGCCAATAATTATTCCTAACTTGTCAAGGGAAAGGTCAAGATGTGTTGATCATAAAAGCCCTTGTGTTCCTCCTTCCAGGAGGGAGCAGCCTCGCATAAAGCGGCCACCATCACCTGTAGTGCTTTGTGTGCCACGTGCACCACGCCCACCCCCACCTTCCCCTGTGAGTGACTCCAGGAAACAAAGGGGTTTTCCAACTGTTAGATCTGGTAGTTCCAGCCCAAGGCACTGGGGGATGCGAGGCTGGTATCATGATGGAAGTAATTTGGAGGAAGCTTGTTTAAGAATGGATGGTGCTGAAGTTGTGTGGCCTTCTTGGAGAAGTAATAATCTTGCAGTGCAACCTTTGATTCAACCTTTACCTGCTGCCTTGCTGCAGGACCGCTTGATTGCAATGTCACAGATAGCACGTGATCAGGAACATCCAGATGTGACCTTTCCTTTGCAACCTCCTGAGTTACAAAGCTGTTCTGCATCAAGTGCATCTTTATCATTGATGCATGGAATGCTCCACGATGAGATTGACTCTTTCTGTAAACAGGTTGCTGCAGAAAATATGGCCAGGAGGCCTTACATTAATTGGGCTGTCAAGAGAGTTACCCGATCTCTGCAGGTTCTATGGCCCAGATCCAGGACTAACATATTTGGTTCAAATGCAACTGGTATGTCTCTTCCAACAAGTGATGTTGACCTTGTGGTTTGCCTCCCTCCAGTGAGGAACCTGGAACCTATTAAAGAAGCTGGAATATTGGAAGGTCGTAATGGTATTAAAGAAACATGTCTTCAGCATGCAGCTAGGTATCTTGCCAATCAGGACTGGGTAAAAAGTGATTCTCTGAAGACAGTGGAAAATACAGCTATTCCTATTATTATGCTCGTGGTGGAAGTACGTCAGGATGTTATAACTCCATCGGCTCCTATGATACATTCATTAAAAGAAGAGCCACATTGTACTTCTGATGAACATGGTAATGACAGTAATTCTGATATTATCCAGTCAGAAGATTCAGGTTTGCTAAAAAGCTCCCAAATAAATTCATATGCCTTGAAAGAGTCCAAATCAGTTCGTCTTGACATCAGCTTTAAGACCCCATCACATACAGGACTCCAAACTACAGAAATGGTTAAGGAGTTGACGGAACAATTTCCTGCTGCTACTCCTCTTGCTTTGGTACTAAAACAGTTTTTGGCAGATCGGAGCCTCGATCAGTCCTACTCTGGTGGCTTAAGTTCCTACTGTTTGGTTTTACTAATTATACGTTTTCTTCAGCATGAGCACCATCTTGGCCGGCCAATCAACCAAAACTATGGAAGTCTTCTGATGGATTTTCTTTACTTTTTTGGGAATGTGTTTGATCCTCGCCAAATGCGGATATCAGTGCAGGGAAGTGGACTTTATATAAAAAGAGAAAGAGGTTGTAGCATTGATCCAATTCACATAGACGATCCTCTTTTTCCAACAAATAATGTGGGAAGGAATTGCTTCCGAATACATCAATGTATTAAGGCATTTTCAGAAGCTTATTCTGTTCTTGAACATGAACTTACATTCCTAAATGGTGATGGTGAGCCATGTCCAAGGCCTTCTTACAGACTGCTTCCAAAAATCATCCCAAGTCTTGATATATCTTAA 4659 0.4387 MAHRQLMDSLTSHISLYHSQSPNPNPNPNPNPRTSILKWFSSLSLHQRLAHLTIVDSNFVQILLQMLAKLRANGHGSFIILPDLPSRDSPFIPTLCFKKSRGLLARVADSDRAGRWLFESARLFESHEGENVATCSCSPSRLDAVTLAEDLVEDVDRFVEAMDRISNGGFLRGEEAELGVDWVELNWLKSKGYYGIEAFLANRIEVSMRLAWLNSSSGRKRGVKLKEKLNAAGVAANVYWRKKGCVDWWGNLDAVTRKKVFTTIIMKAAKHLTCEVLKVASSASEGEIWLYSTGVDKLLQYNRPASAQRTIPTFPDDTEFGTVITPVTFCKKPAALVRAFNSLFVLQDVIMMITSSLNNKHDIGKLFFSSLDSVCTISDCILRKMRGFIMVISLDCTKLELFEDELDKSSSGKSKEKLSVSNRKKKGRTRNTKRQNPVPKTCVDGTSHDPLKDIDRVVDNKKKTDFVGSRELPDVPLGKEISMGSSSSTVKMDHTQDSDVGKLRTTPRRGRKEKSKNKNTRVDSAVRDSQKSSMNAASTTVISEGEVATCDRFFDSTTIQNVKNDNSIGNDILASNSSLCSSLSGLTKENSSARKVEGENIEDIAESCNSSGPQCCILSNERKELSSGLDTLTCDADCEAITPPIPALKHGSFFSNEDTCPLKTTCAAKADVKSTVHDKPIREVNVKEYGMLKEQDRCLFESRNSAFSKCSPYEWPGIPSIYFPSFNSHLPPATDRLHLDVGRNWHNHFCYPFVPTLPQARNTSIEGGCNQILPHPIPMSFDWPPVFRGGMTPSPNCNYDSGFMSRRQCTFSKGLPVHSVQVDATSPDDERKYSGDILDLPDLTNGQELADEFDNHCVSEEEYDFHAVSDIDYNQYFGGGIMYWNPSDHPGKGFSRPPSLSSDDSIWALREADVNRTVDDMVAFPSSYNTNGLTSPTAATFCSPFDPVGTGSQTVGFVMSGNEVLGKVLHSSSATDAAVDEDTSGSLGNNLPGEIEGKAGDSHPYPILRPIIIPNLSRERSRCVDHKSPCVPPSRREQPRIKRPPSPVVLCVPRAPRPPPPSPVSDSRKQRGFPTVRSGSSSPRHWGMRGWYHDGSNLEEACLRMDGAEVVWPSWRSNNLAVQPLIQPLPAALLQDRLIAMSQIARDQEHPDVTFPLQPPELQSCSASSASLSLMHGMLHDEIDSFCKQVAAENMARRPYINWAVKRVTRSLQVLWPRSRTNIFGSNATGMSLPTSDVDLVVCLPPVRNLEPIKEAGILEGRNGIKETCLQHAARYLANQDWVKSDSLKTVENTAIPIIMLVVEVRQDVITPSAPMIHSLKEEPHCTSDEHGNDSNSDIIQSEDSGLLKSSQINSYALKESKSVRLDISFKTPSHTGLQTTEMVKELTEQFPAATPLALVLKQFLADRSLDQSYSGGLSSYCLVLLIIRFLQHEHHLGRPINQNYGSLLMDFLYFFGNVFDPRQMRISVQGSGLYIKRERGCSIDPIHIDDPLFPTNNVGRNCFRIHQCIKAFSEAYSVLEHELTFLNGDGEPCPRPSYRLLPKIIPSLDIS. 1553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g10987 1552 MobiDBLite consensus disorder prediction 468 539 - -
Seca4g10987 1552 MobiDBLite consensus disorder prediction 419 433 - -
Seca4g10987 1552 MobiDBLite consensus disorder prediction 1068 1082 - -
Seca4g10987 1552 Gene3D Beta Polymerase, domain 2 1193 1310 IPR043519 -
Seca4g10987 1552 MobiDBLite consensus disorder prediction 1024 1042 - -
Seca4g10987 1552 SUPERFAMILY PAP/OAS1 substrate-binding domain 1392 1524 - -
Seca4g10987 1552 SUPERFAMILY Nucleotidyltransferase 1181 1387 IPR043519 -
Seca4g10987 1552 Gene3D - 1349 1535 - -
Seca4g10987 1552 MobiDBLite consensus disorder prediction 1049 1065 - -
Seca4g10987 1552 Pfam Nucleotidyltransferase domain 1206 1249 IPR002934 GO:0016779
Seca4g10987 1552 PANTHER POLY(A) RNA POLYMERASE 487 1546 IPR045862 GO:0043631|GO:1990817
Seca4g10987 1552 MobiDBLite consensus disorder prediction 411 455 - -
Seca4g10987 1552 MobiDBLite consensus disorder prediction 1024 1083 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g10987 Seca-Chr4 247727541 247738935 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g10987 - - tpra:123920018 2286.15