Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g10984 ATGATATATTGTGAAATTTGTAAGATTGAGTGCAATAGTCCTGAAATCATGGAACAGCATAAGAACGGAAAGAGACATAAGAAAAATATGAAAGCACATGAAGAATTACAGAGACGCAATGTTATAAATGGACAACAGAGTGAACAGCTTTCTACCTCTCAACTGAATTTGGCAGATCAGCCTAAGAATGTTCAGAAATCTGAGAAGAAAGAATGCCCCACAGAAAATTTGGGCTCTGAAATTACAGCTAATAATCACAAGGATGTAATAGAGCTGCAGAATAATGTAGGAGAGACTTCTGAAGTTCCTGCTGAAGAGCCTGGGGGGAAAACCACTGATAACTCTGCTGCAAGAGGCCGAGGATTGAAGCGTAAGATGAGAGGAGGAAAAGCAAGTAAATTCATGAAGACTAATGATGGTTCAAGGCCAGTGCAACTTTCAAAACCTGAGCAAGCTATATCTTTTAAATGTGAGTTGTGCAATGTTAAATGTGAATCCAATGTTGTTTACCAGAGTCATTTGAATGGGAAAAAGCACTTATCAAGACTGAAGCGTGGTCCTGGTCACCAAACTTCATCTAGAGTAGATCATCAAGCTTTGTCTGGAGTTTCAGGGCTTCAAGCACTTTACCCACCTGACATCAATGCTTTGGCGAATGCAATTAATACTCAAGTCCAACAAGGTGATAATGATCCACAGCTACTTTTGGCTCAGCTCTTGATGAATGTACTATCTCAAGCACAAGTACCAGCAATATCACCACAGTCAGCCCCCTTGACTGGTCAGATACCAGCACCCACATCTGTGGCCGGTTCAAGTTATGGGCCCCAGTTGTTGCAGACACAAGTGTCAGAAATCGCAGCACAAGGTGACATGGAAAATCCTGCTGGGGAAACAAAAAATGAGCTGTTATCTTCCGCACCCGAGTTAAATGGACCGGCTGGTTCAAGTGTTACCCAAATTGAAGGTGGAAGTGCTTATACTAAACAGGTTTTACAACAACCCCAGGACATTTCAGGTATGACACCGGCAGACAATTCAGGCGCAGCAAATGAGCAAATAAATACCTTCATAATGTGA 1080 0.4194 MIYCEICKIECNSPEIMEQHKNGKRHKKNMKAHEELQRRNVINGQQSEQLSTSQLNLADQPKNVQKSEKKECPTENLGSEITANNHKDVIELQNNVGETSEVPAEEPGGKTTDNSAARGRGLKRKMRGGKASKFMKTNDGSRPVQLSKPEQAISFKCELCNVKCESNVVYQSHLNGKKHLSRLKRGPGHQTSSRVDHQALSGVSGLQALYPPDINALANAINTQVQQGDNDPQLLLAQLLMNVLSQAQVPAISPQSAPLTGQIPAPTSVAGSSYGPQLLQTQVSEIAAQGDMENPAGETKNELLSSAPELNGPAGSSVTQIEGGSAYTKQVLQQPQDISGMTPADNSGAANEQINTFIM. 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g10984 359 SMART c2h2final6 155 179 IPR013087 -
Seca4g10984 359 SMART c2h2final6 2 26 IPR013087 -
Seca4g10984 359 PANTHER OS06G0651300 PROTEIN-RELATED 4 192 - -
Seca4g10984 359 SUPERFAMILY beta-beta-alpha zinc fingers 154 185 IPR036236 -
Seca4g10984 359 SUPERFAMILY beta-beta-alpha zinc fingers 2 34 IPR036236 -
Seca4g10984 359 Gene3D Classic Zinc Finger 131 185 - -
Seca4g10984 359 Gene3D Classic Zinc Finger 1 35 - -
Seca4g10984 359 SMART ZnF_U1_5 2 33 IPR003604 GO:0003676|GO:0008270
Seca4g10984 359 SMART ZnF_U1_5 152 186 IPR003604 GO:0003676|GO:0008270
Seca4g10984 359 MobiDBLite consensus disorder prediction 98 145 - -
Seca4g10984 359 Pfam Zinc-finger of C2H2 type 155 179 - -
Seca4g10984 359 Pfam Zinc-finger of C2H2 type 3 26 - -
Seca4g10984 359 MobiDBLite consensus disorder prediction 60 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g10984 Seca-Chr4 247706916 247708321 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g10984 - - lja:Lj0g3v0199689.2 407.142